Table 7.

Proteomic databases relevant to organelle analysis.

Software & Website	Type	Features	Organelles	Reference
LOCATE http://locate.imb.uq.edu.au/	Human and murine subcellular protein localization database	Based entirely on experimental results, MemO (membrane protein prediction), subcellular localization via N-terminal myc tag, and indirect immunofluorescence, Location Proteome (proteins contained within a specific area of the cell based on fluorescence spectroscopy creating a localization tree)	Nucleus, plasma membrane, extracellular, mitochondria, ER, Golgi apparatus, lysosomes, endosomes, cytoplasmic vesicles, peroxisome, cytoskeleton	Sprenger, 2008262
iLOC-EUK	Subcellular localization prediction tool for single- or multiple-location eukaryotic proteins	GO (Gene Ontology), SeqEvo (Sequential Evolution) descriptor, Multi-Label KNN (K-Nearest Neighbor) classifier, PseAAC (pseudo amino acid composition)	Acrosome, cell membrane, cell wall, centriole, chloroplast, cyanelle, cytoplasm, cytoskeleton, ER, endosome, extracellular, Golgi apparatus, hydrogenosome, lysosome, melanosome, microsome, mitochondrion, nucleus, peroxisome, spindle pole body, synapse, vacuole	Chou, 2011263
Plant-mPLoc http://www.csbio.sjtu.edu.cn/bioinf/plant-multi/	Plant subcellular protein localization prediction tool	GO (Gene Ontology), FunD (Functional Domain) descriptor, SeqEvo (Sequential Evolution) descriptor, OET-KNN (Optimized Evidence-Theoretic K Nearest Neighbor) prediction engine	Cell membrane, cell wall, chloroplast, cytoplasm, ER, Golgi apparatus, mitochondrion, nucleus, peroxisome, plastid, vacuole	Chou, 2010264
PepTracker http://www.peptracker.com/	Platform for visualization of the distribution of proteins over subcellular compartments	Storage of quantitative data from MaxQuant, visualization of the data for more efficient data mining, automated analysis of patterns and trends	Nucleus, nucleolus, cytoplasm	Boisvert, 2012265