Table 3. Sequences in genomic regions flanking EPSPS in A. palmeri have similarity to known transposable elements in rice [28].
Sequence | Oryza Repeat Database Hit | Strand | Length of Similarity (bp) | Hit Score | % Match |
5′ MITE | ORSgTEMT00500849, putative MITE, Gaijin/Gaigin-like | + | 155 | 122 | 60 |
ORSgTEMT01602459, putative MITE, MITE-adh, type B-like | + | 160 | 128 | 57 | |
3′ MITE | ORSgTEMT01600913, putative MITE, MITE-adh, type B-like | – | 209 | 170 | 58 |
ORSgTEMT02900113, putative MITE, MITE-adh-4-like | – | 298 | 186 | 57 | |
ORSgTEMT00100233, putative MITE, Tourist-like | – | 140 | 169 | 62 |
Sequences were identified bordering EPSPS in a contig assembled from 454 sequencing of GA-R gDNA.