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. 2013 Jun 11;8(6):e65546. doi: 10.1371/journal.pone.0065546

Table 1. Potential pathogenic mutations detected in 10 of the 47 families.

Family ID Gene Variations Status Bioinformation analysis Allele frequency in Reference
DNA Protein SIFT Polyphen-2 Splice Phastcons _score patients controls
Family 1 ABCA4 c.4604dup p.T1537Nfs*18 hetero 0.997 1/94 0/384 novel
Family 1 ABCA4 c.1957C>T p.R653C hetero D PD 1.000 1/94 NA [38]
Family 2 CNGB3 c.1774dup p.E592Gfs*44 homo 1.000 2/94 0/384 novel
Family 3 CNGB3 c.129+1G>A homo DSA 1.000 2/94 0/384 novel
Family 4 CNGB3 c.2415A>C p.E805D hetero D PD 1.000 1/94 NA rs186448979#
Family 4 CNGB3 c.1957G>A p.A653T hetero tolerated benign 0.000 1/94 0/384 novel
Family 5 PDE6C c.1935+1del hetero DSA 1.000 1/94 0/384 novel
Family 5 PDE6C c.2518+5G>C NA hetero DSA 0.112 1/94 0/384 novel
Family 6 PDE6C c.1004+1G>A homo DSA 1.000 2/94 0/384 novel
Family 7 RPGRIP1 c.2592T>G p.Y864* hetero 0.994 1/94 0/384 novel
Family 7 RPGRIP1 c.799C>T p.R267* hetero 1.000 1/94 NA [36]
Family 8 CACNA1F c.2542G>A p.G848S hemi tolerated benign 1.000 1/94 0/384 novel
Family 9 RPGR c.785C>G p.A262G hemi tolerated benign 0.002 1/94 NA [39]
Family10 RPGR c.2447_2461del p.G816_E820del hemi NA 1/94 NA [40]

Note: D = damaging; PD = probably damaging; DSA = donor site abolished.

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The variation was found in 1000 Genomes database with the Global minor allele frequency (MAF) of G = 0.001/3 so that the pathogeneity of the variants in this family need to be clarified further.