Skip to main content
. Author manuscript; available in PMC: 2014 Jan 1.
Published in final edited form as: Prog Retin Eye Res. 2012 Sep 11;32:102–180. doi: 10.1016/j.preteyeres.2012.08.004

Table 2.

Primer pairs and product sizes for selected gene transcripts studied in human retinal endothelial cells.

Gene Transcript Primer Pair (Product Size)Reference (if applicable)
Supervillin for: 5′-TGGTGTTTGATTTTGGTAGTGAA-3′
rev: 5′-TAAGCGGATTGCATTCTCCA-3′(165 bp)
ICAM-1 for: 5′-TAAGCCAAGAGGAAGGAGCA-3′
rev: 5′-CATATCATCAAGGGTTGGGG-3′ (282 bp)1
VCAM-1 for: 5′-CGTCTCATTGACTTGCAGCACC-3′
rev: 5′-GTGATCGGCTTCCCAGCCTC-3′ (276 bp) 2
E-selectin for: 5′-GAGCCTTCAGTGTACCTCATC-3′
rev: 5′-GACAATTCATGTAGCCTCGCTC-3′ (296 bp) 2
P-selectin for: 5′-GGATTGTTCTGACACTCGTGG-3′
rev: 5′-GAGGTTGGAGCAGTTCATCG-3′ (412 bp)
CD44 for: 5′-ACATCAGTCACAGACCTGCC-3′
rev: 3′-GCAAACTGCAAGAATCAAAGCC-3′ (471 bp)3
CXCL10 for: 5′-AAGAGATGTCTGAATCCAGAATCGAAGG-3′
rev: 5′-CCTCAGTAGAGCTTACATTATAGTGCCAG-3′ (333 bp)
CCL20 for: 5′-TGCTGTACCAAGAGTTTGCTC-3′
rev: 5′-GATTTGCGCACACAGACAAC-3′ (226 bp)
VEGF-165 for: 5′-ATCTTCAAGCCATCCTGTGTGC-3′
rev: 5′-CAAGGCCCACAGGGATTTTC-3′ (224 bp)4
GAPDH for: 5′-AGCTGAACGGGAAGCTCACTGG-3′
rev: 5′-GGAGTGGGTGTCGCTGTTGAAGTC-3′ (209 bp)5
1

Lu Y, Fukuda K, Nakamura Y, et al. Inhibitory effect of triptolide on chemokine expression induced by proinflammatory cytokines in human corneal fibroblasts. Invest Ophthalmol Vis Sci 2005; 46: 2346–2352.

2

Smith JR, Choi D, Chipps TJ, Pan Y, Zamora DO, Davies MH, Babra B, Powers MR, Planck SR, Rosenbaum JT. Unique gene expression profiles of donor-matched human retinal and choroidal vascular endothelial cells. Invest Ophthalmol Vis Sci 2007; 48: 2676–2684.

3

Liu NP, Roberts WL, Hale LP, et al. Expression of CD44 and variant isoforms in cultured human retinal pigment epithelial cells. Invest Ophthalmol Vis Sci 1997; 38: 2027–2037.

4

Zygalaki E, Stathopoulou A, Kroupis C, Kaklamanis L, Kyriakides Z, Kremastinos D, Lianidou ES. Real-time reverse transcription-PCR quantification of vascular endothelial growth factor splice variants. Clin Chem 2005; 51: 1518–1520.

5

Silverman MD, Zamora DO, Pan Y, et al. Constitutive and inflammatory mediator-regulated fractalkine expression in human ocular tissues and cultured cells. Invest Ophthalmol Vis Sci 2003; 44: 1608–1615.