Table 4.
F-scores of top 10 CNVs detected by each method from the sample NA19240
| CNVs | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 |
|---|---|---|---|---|---|---|---|---|---|---|
| CNV-seq |
0.74 |
0.73 |
0.64 |
0.62 |
0.53 |
0.42 |
0.40 |
0.30 |
0.05 |
0.04 |
| FREEC |
0.88 |
0.83 |
0.65 |
0.64 |
0.63 |
0.63 |
0.53 |
0.53 |
0.48 |
0.43 |
| readDepth |
0.81 |
0.80 |
0.79 |
0.75 |
0.74 |
0.71 |
0.71 |
0.64 |
0.62 |
0.57 |
| CNVnator |
0.92 |
0.90 |
0.88 |
0.84 |
0.82 |
0.82 |
0.79 |
0.78 |
0.77 |
0.73 |
| SegSeq |
0.93 |
0.91 |
0.89 |
0.59 |
0.57 |
0.55 |
0.48 |
0.45 |
0.45 |
0.45 |
| EWT |
0.93 |
0.92 |
0.78 |
0.77 |
0.73 |
0.64 |
0.58 |
0.56 |
0.41 |
0.24 |
| CNV-TV | 0.92 | 0.86 | 0.81 | 0.79 | 0.78 | 0.74 | 0.74 | 0.69 | 0.58 | 0.57 |