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. 2013 Jun 5;7:44. doi: 10.1186/1752-0509-7-44

Table 1.

K90 GIL Collection Overview

GILA Arrays Datasets Nodes Edges <k> RMT γ ModulesB GOc Interpro KEGGC AraCycc POC GILA Arrays Datasets Nodes Edges <k> RMT γ ModulesB GOc Interpro KEGGC AraCycc POC
1
 48
 7
 2,563
 7,051
 5.50
 0.929
 1.99
 616/294
 153/225
 192/112
 192/112
 19/18
 21/13
 46
 116
 28
 n.a.
 n.a.
 n.a.
 n.a.
 n.a.
 n.a./n.a.
 n.a./n.a.
 n.a./n.a.
 n.a./n.a.
 n.a./n.a.
 n.a./n.a.
2
 38
 2
 1,921
 7,807
 8.13
 0.943
 1.85
 418/226
 98/135
 84/50
 84/50
 14/19
 11/34
 47
 105
 12
 1,445
 4,969
 6.88
 0.910
 1.85
 280/282
 122/123
 119/110
 54/90
 15/15
 10/19
3
 76
 22
 2,919
 6,415
 4.40
 0.844
 2.13
 763/251
 313/219
 298/130
 298/130
 28/20
 45/36
 48
 269
 31
 2,638
 11,228
 8.51
 0.803
 1.78
 489/493
 316/663
 231/317
 103/200
 35/38
 45/62
4
 72
 12
 2,764
 6,565
 4.75
 0.872
 2.07
 713/319
 334/448
 303/168
 303/168
 38/17
 45/23
 49
 39
 2
 1,954
 9,688
 9.92
 0.935
 1.76
 413/376
 177/286
 160/133
 78/86
 15/10
 14/3
5
 40
 2
 997
 4,346
 8.72
 0.936
 1.86
 197/136
 115/107
 81/35
 81/35
 11/7
 3/2
 50
 113
 27
 3,520
 11,996
 6.82
 0.809
 1.92
 770/497
 330/350
 284/222
 144/99
 30/5
 21/14
6
 123
 25
 2,446
 15,547
 12.71
 0.835
 1.75
 507/458
 254/854
 203/360
 203/360
 24/19
 18/24
 51
 45
 9
 2,377
 4,570
 3.85
 0.911
 2.20
 651/223
 153/132
 173/75
 90/43
 16/9
 4/3
7
 75
 22
 2,491
 4,259
 3.42
 0.842
 2.26
 705/229
 267/148
 251/77
 251/77
 21/13
 10/8
 52
 8
 1
 n.a.
 n.a.
 n.a.
 n.a.
 n.a.
 n.a./n.a.
 n.a./n.a.
 n.a./n.a.
 n.a./n.a.
 n.a./n.a.
 n.a./n.a.
8
 42
 4
 1,596
 5,282
 6.62
 0.964
 1.92
 315/217
 90/72
 88/65
 88/65
 13/13
 19/15
 53
 143
 32
 1,898
 5,518
 5.81
 0.826
 1.96
 438/232
 231/186
 192/94
 86/64
 17/15
 19/12
9
 84
 2
 1,859
 16,072
 17.29
 0.876
 1.64
 327/374
 121/927
 90/165
 90/165
 22/92
 24/39
 54
 85
 13
 1,983
 3,849
 3.88
 0.859
 2.23
 522/206
 166/80
 191/52
 70/36
 22/14
 18/9
10
 147
 16
 1,804
 9,878
 10.95
 0.898
 1.70
 317/329
 168/543
 111/98
 111/98
 16/44
 46/93
 55
 87
 29
 3,811
 16,013
 8.40
 0.802
 1.83
 815/668
 373/580
 311/261
 137/170
 38/27
 28/14
11
 63
 1
 1,971
 16,547
 16.79
 0.889
 1.62
 351/484
 175/1070
 148/402
 148/402
 19/39
 15/46
 56
 40
 4
 1,414
 13,540
 19.15
 0.965
 1.54
 206/448
 87/540
 63/87
 23/103
 8/3
 46/265
12
 124
 14
 1,257
 5,985
 9.52
 0.875
 1.75
 212/294
 63/93
 47/43
 47/43
 5/16
 12/8
 57
 27
 3
 1,944
 7,628
 7.85
 0.916
 1.91
 506/229
 106/319
 125/65
 52/81
 13/17
 32/36
13
 49
 5
 1,293
 3,808
 5.89
 0.952
 1.96
 295/158
 59/84
 79/39
 79/39
 7/16
 1/2
 58
 131
 17
 1,861
 8,262
 8.88
 0.865
 1.81
 367/360
 283/694
 183/200
 79/186
 38/84
 33/73
14
 87
 10
 3,286
 37,336
 22.72
 0.867
 1.58
 583/779
 218/1186
 190/328
 190/328
 24/44
 69/117
 59
 50
 13
 926
 2,415
 5.22
 0.927
 2.05
 229/102
 41/27
 63/20
 20/6
 7/0
 6/5
15
 46
 10
 1,925
 10,961
 11.39
 0.941
 1.75
 382/350
 86/71
 123/48
 123/48
 8/6
 21/51
 60
 44
 13
 1,703
 6,996
 8.22
 0.916
 1.83
 381/267
 199/404
 165/85
 75/118
 17/10
 34/64
16
 64
 9
 1,552
 5,071
 6.53
 0.926
 1.94
 359/220
 98/60
 114/35
 114/35
 3/8
 6/3
 61
 59
 4
 2,006
 10,532
 10.50
 0.891
 1.69
 327/391
 175/582
 102/192
 44/137
 13/54
 30/38
17
 37
 7
 1,895
 12,248
 12.93
 0.945
 1.66
 347/472
 109/465
 72/129
 72/129
 14/49
 19/29
 62
 73
 16
 1,185
 4,543
 7.67
 0.886
 1.91
 278/213
 139/177
 143/79
 74/70
 13/6
 6/2
18
 43
 6
 1,783
 6,340
 7.11
 0.943
 1.90
 416/322
 78/86
 120/69
 120/69
 15/14
 12/14
 63
 131
 23
 2,448
 6,632
 5.42
 0.850
 1.98
 538/303
 234/279
 193/143
 98/93
 18/32
 31/45
19
 166
 33
 2,866
 9,723
 6.79
 0.795
 1.89
 628/393
 323/278
 293/116
 293/116
 36/33
 40/44
 64
 197
 30
 3,122
 11,982
 7.68
 0.781
 1.81
 589/435
 361/484
 257/234
 114/147
 33/35
 48/66
20
 142
 34
 3,440
 12,799
 7.44
 0.783
 1.88
 752/432
 336/385
 294/196
 132/149
 34/35
 36/52
 65
 30
 3
 332
 1,685
 10.15
 0.988
 1.69
 60/85
 64/263
 23/54
 11/61
 5/27
 1/4
21
 71
 9
 1,525
 12,678
 16.63
 0.922
 1.62
 263/332
 121/354
 84/98
 30/75
 16/53
 29/68
 66
 23
 4
 2,523
 20,630
 16.35
 0.954
 1.86
 626/325
 132/64
 158/34
 72/27
 16/5
 26/34
22
 70
 9
 2,465
 6,898
 5.60
 0.903
 2.03
 633/288
 191/200
 231/109
 99/67
 19/18
 15/37
 67
 215
 41
 3,254
 16,033
 9.85
 0.762
 1.78
 617/461
 377/533
 285/298
 128/172
 48/68
 63/66
23
 24
 1
 402
 3,010
 14.98
 0.983
 1.60
 66/97
 3/15
 8/10
 7/8
 0/0
 0/5
 68
 86
 18
 1,283
 7,209
 11.24
 0.893
 1.69
 223/268
 171/767
 99/230
 47/172
 19/43
 24/22
24
 87
 6
 2,347
 5,280
 4.50
 0.905
 2.09
 599/298
 169/184
 172/133
 86/78
 12/5
 14/15
 69
 192
 19
 3,597
 40,668
 22.61
 0.823
 1.59
 585/597
 301/504
 269/264
 103/77
 26/58
 78/946
25
 72
 14
 3,512
 10,063
 5.73
 0.856
 2.06
 895/319
 338/203
 295/93
 146/59
 37/25
 43/54
 70
 37
 8
 n.a.
 n.a.
 n.a.
 n.a.
 n.a.
 n.a./n.a.
 n.a./n.a.
 n.a./n.a.
 n.a./n.a.
 n.a./n.a.
 n.a./n.a.
26
 32
 5
 1,792
 26,789
 29.90
 0.920
 1.62
 413/280
 41/23
 72/32
 33/9
 11/11
 28/244
 71
 235
 24
 2,034
 7,791
 7.66
 0.859
 1.85
 410/282
 231/250
 202/141
 78/70
 16/33
 39/137
27
 72
 1
 634
 2,043
 6.44
 0.966
 1.91
 128/103
 52/52
 57/46
 24/24
 4/3
 6/3
 72
 24
 2
 1,314
 4,931
 7.51
 0.948
 1.88
 279/262
 47/39
 68/28
 22/25
 7/18
 13/6
28
 75
 9
 593
 5,428
 18.31
 0.961
 1.57
 96/128
 21/21
 28/20
 12/24
 5/16
 1/3
 73
 114
 16
 2,145
 13,061
 12.18
 0.836
 1.76
 454/403
 131/126
 176/131
 70/66
 18/43
 21/41
29
 129
 22
 2,798
 9,343
 6.68
 0.814
 1.91
 595/366
 299/282
 254/153
 118/107
 37/26
 23/12
 74
 42
 7
 1,244
 3,508
 5.64
 0.956
 2.00
 284/183
 55/26
 92/16
 46/34
 8/13
 4/0
30
 104
 9
 2,107
 21,381
 20.30
 0.870
 1.60
 363/495
 128/314
 115/168
 66/88
 18/73
 19/28
 75
 161
 44
 2,689
 13,042
 9.70
 0.791
 1.84
 554/342
 247/579
 262/247
 112/158
 34/15
 12/12
31
 40
 10
 2,715
 7,370
 5.43
 0.895
 2.06
 725/293
 147/156
 217/144
 100/103
 32/27
 23/54
 76
 34
 4
 1,198
 8,819
 14.72
 0.930
 1.66
 215/313
 46/104
 65/190
 22/14
 9/24
 7/32
32
 104
 9
 1,918
 6,878
 7.17
 0.910
 1.86
 420/387
 247/488
 154/106
 82/137
 16/39
 13/13
 77
 70
 9
 2,340
 5,730
 4.90
 0.893
 2.07
 591/291
 239/315
 194/103
 110/77
 20/19
 10/5
33
 61
 4
 1,409
 5,306
 7.53
 0.923
 1.94
 349/200
 81/35
 111/36
 44/13
 12/5
 7/4
 78
 172
 31
 3,513
 15,437
 8.79
 0.777
 1.76
 665/570
 451/880
 361/392
 150/287
 53/45
 40/107
34
 34
 4
 2,213
 7,181
 6.49
 0.932
 1.92
 524/238
 111/109
 153/74
 56/29
 16/13
 52/56
 79
 26
 6
 2,599
 5,542
 4.26
 0.927
 2.22
 741/225
 124/67
 186/44
 85/25
 12/5
 14/13
35
 49
 9
 2,004
 6,306
 6.29
 0.935
 1.93
 458/297
 217/394
 155/125
 88/107
 19/41
 9/16
 80
 112
 30
 3,288
 23,432
 14.25
 0.821
 1.75
 628/621
 294/324
 246/134
 124/75
 31/29
 23/19
36
 18
 1
 1,365
 7,141
 10.46
 0.952
 1.79
 2889/198
 79/98
 68/60
 30/38
 13/10
 15/18
 81
 18
 1
 678
 2,830
 8.35
 0.959
 1.83
 146/132
 11/2
 34/17
 6/8
 1/6
 0/3
37
 55
 6
 2,450
 7,970
 6.51
 0.941
 1.94
 556/318
 138/269
 166/84
 75/72
 21/38
 9/4
 82
 125
 22
 1,979
 9,804
 9.91
 0.841
 1.80
 416/306
 189/314
 152/116
 60/90
 19/21
 14/10
38
 18
 2
 1,904
 4,469
 4.69
 0.955
 2.13
 575/229
 39/26
 145/24
 49/10
 17/9
 5/11
 83
 54
 2
 915
 4,027
 8.80
 0.948
 1.79
 164/115
 106/291
 67/36
 25/51
 11/28
 8/12
39
 54
 7
 1,780
 5,460
 6.13
 0.871
 1.97
 443/236
 144/129
 159/126
 68/74
 7/5
 28/19
 84
 116
 12
 2,531
 9,667
 7.64
 0.866
 1.86
 554/413
 204/232
 189/174
 89/85
 22/17
 29/24
40
 60
 7
 1,867
 5,686
 6.09
 0.903
 1.94
 415/212
 241/227
 174/78
 96/89
 32/24
 13/7
 85
 34
 5
 1,749
 6,155
 7.04
 0.939
 1.92
 424/237
 137/138
 129/54
 64/65
 19/21
 12/15
41
 73
 13
 2,045
 4,463
 4.36
 0.897
 2.14
 558/217
 166/162
 179/47
 86/57
 21/26
 5/11
 86
 99
 20
 2,979
 10,234
 6.87
 0.812
 1.91
 671/439
 282/432
 253/149
 106/129
 37/58
 35/23
42
 74
 3
 1,757
 8,417
 9.58
 0.902
 1.78
 346/322
 150/449
 134/257
 59/162
 16/49
 26/12
 87
 18
 5
 1,871
 2,559
 2.74
 0.968
 2.60
 619/147
 58/35
 117/29
 62/13
 10/3
 12/6
43
 127
 1
 n.a.
 n.a.
 n.a.
 n.a.
 n.a.
 n.a./n.a.
 n.a./n.a.
 n.a./n.a.
 n.a./n.a.
 n.a./n.a.
 n.a./n.a.
 88
 77
 16
 2,926
 10,935
 7.47
 0.860
 1.89
 650/326
 304/413
 224/153
 108/109
 20/17
 39/53
44
 24
 1
 428
 6,269
 29.29
 0.978
 1.43
 60/128
 16/44
 20/18
 10/17
 4/1
 0/1
 89
 20
 2
 1,359
 6,848
 10.08
 0.957
 1.73
 270/265
 71/24
 72/63
 38/25
 7/18
 17/39
45 177 40 2,436 9,984 8.20 0.808 1.81 478/392 248/590 211/198 92/183 28/29 24/15 90 54 7 612 1,398 4.57 0.957 2.07 139/87 49/42 51/32 25/9 7/4 2/0

AGene Interaction Layers 43,46,52,72 failed to construct; BModules counts are listed as MCL/LCM; CNumber of enriched terms in MCL/LCM modules.