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. Author manuscript; available in PMC: 2014 May 3.
Published in final edited form as: J Proteome Res. 2013 Apr 3;12(5):2151–2164. doi: 10.1021/pr3011974

Table 1.

Swiss-Prot ID Identified Protein % coverage No. of unique peptides Total spectra Primary cellular function Protein MW (Da)
1 Q13442 28 kDa heat- and acid-stable phosphoprotein 14.9% 2 2 Cell Signalling/Motility/Architecture 20630.8
2 P35613 Basigin 7.0% 2 2 42199.7
3 P25440 Bromodomain-containing protein 2 2.1% 2 2 88063.3
4 P16070 CD44 antigen 6.9% 4 6 81553.4
5 Q07065 Cytoskeleton-associated protein 4 4.7% 2 2 66022.2
6 Q08554 Desmocollin-1 4.5% 4 4 99988.1
7 Q02413 Desmoglein-1 3.1% 2 2 113748.9
8 P06753 Isoform TM30nm of Tropomyosin alpha-3 chain 10.9% 2 2 29033.3
9 Q03252 Lamin-B2 3.5% 2 2 67689.8
10 P55081 Microfibrillar-associated protein 1 6.2% 2 2 51958.7
11 P46821 Microtubule-associated protein 1B 1.2% 2 2 270620.2
12 P19105 Myosin regulatory light chain 12A 18.7% 3 3 19795.3
13 P35579 Myosin-9 1.2% 2 2 226537.5
14 Q09666 Neuroblast differentiation-associated protein AHNAK 0.4% 2 2 629104.4
15 P41219 Peripherin 4.5% 2 3 53652.0
16 Q15149 Plectin-1 0.7% 2 3 531784.5
17 O00592 Podocalyxin 3.9% 2 2 58635.0
18 P12273 Prolactin-inducible protein 13.7% 2 2 16573.1
19 Q13283 Ras GTPase-activating protein-binding protein 1 4.3% 2 2 52162.8
20 P07996 Thrombospondin-1 2.1% 2 2 129381.7
21 Q13428 Treacle protein 1.7% 2 2 152102.5
22 P09493 Tropomyosin alpha-1 chain 6.7% 2 2 32710.0
23 P67936 Tropomyosin alpha-4 chain 9.7% 2 2 28522.4
24 P07951 Tropomyosin beta chain 6.7% 2 2 32851.7
25 Q71U36 Tubulin alpha-1A chain 3.8% 2 2 50135.7
26 Q13885 Tubulin beta-2A chain 5.4% 2 2 49907.1
27 P05556 Integrin beta-1 6.0% 4 4 88415.1
28 Q16643 Drebrin 5.6% 2 2 71428.6
29 Q01469 Fatty acid-binding protein, epidermal 13.3% 2 2 15164.4
30 P14923 Junction plakoglobin 2.8% 2 2 81745.9
31 P62263 40S ribosomal protein S14 15.9% 2 2 Cellular Homeostasis/Cell Cycle 16272.9
32 P60866 40S ribosomal protein S20 19.3% 2 2 13373.0
33 P62851 40S ribosomal protein S25 24.0% 4 5 13743.0
34 P62753 40S ribosomal protein S6 14.1% 3 3 28681.7
35 P08865 40S ribosomal protein SA 13.6% 3 4 32854.1
36 P14625 Endoplasmin 3.7% 3 3 92471.7
37 O60841 Eukaryotic translation initiation factor 5B 6.2% 5 5 138831.5
38 P14314 Glucosidase 2 subunit beta 8.0% 4 4 59425.8
39 P04406 Glyceraldehyde-3-phosphate dehydrogenase 14.9% 3 3 36053.4
40 Q9H1E3 Nuclear ubiquitous casein and cyclin-dependent kinases substrate 22.6% 3 4 27296.7
41 Q14978 Nucleolar and coiled-body phosphoprotein 1 2.7% 2 2 73604.2
42 Q9NR30 Nucleolar RNA helicase 2 3.3% 2 2 87346.0
43 P19338 Nucleolin 18.3% 14 18 76615.9
44 P06748 Nucleophosmin 13.9% 3 5 32575.5
45 P12270 Nucleoprotein TPR 1.4% 2 2 267289.3
46 Q06830 Peroxiredoxin-1 15.1% 3 4 22110.9
47 Q15061 WD repeat-containing protein 43 3.8% 2 3 74890.8
48 Q86VM9 Zinc finger CCCH domain-containing protein 18 6.8% 6 6 106379.8
49 Q01105 Protein SET 7.2% 2 2 33489.4
50 Q8IZQ5 Selenoprotein H 17.2% 2 2 13453.5
51 Q8IYB3 Serine/arginine repetitive matrix protein 1 3.0% 2 2 102337.5
52 Q9UQ35 Serine/arginine repetitive matrix protein 2 6.3% 12 13 299621.6
53 P26583 High mobility group protein B2 11.5% 2 5 DNA Damage Response/DNA Repair 24034.6
54 O15347 High mobility group protein B3 7.0% 2 2 22980.7
55 P07305 Histone H1.0 11.9% 2 2 20864.1
56 Q02539 Histone H1.1 5.6% 2 4 21843.2
57 P16403 Histone H1.2 9.9% 2 3 21365.8
58 Q96QV6 Histone H2A type 1-A 12.2% 2 2 14234.2
59 P62807 Histone H2B type 1-C/E/F/G/I 7.9% 2 3 13906.6
60 Q16695 Histone H3.1t 11.8% 2 2 15508.9
61 P62805 Histone H4 38.8% 4 4 11367.7
62 Q3SYE8 Putative high mobility group protein B3-like-1 20.0% 2 2 14606.9
63 P23246 Splicing factor, proline- and glutamine-rich 4.2% 2 2 76149.5
64 P62988 Ubiquitin 32.9% 2 2 8565.3
65 Q14444 Caprin-1 6.4% 4 4 RNA Processing/mRN A Splicing 78364.4
66 P61978 Heterogeneous nuclear ribonucleoprotein K 5.0% 2 2 50978.5
67 P22626 Heterogeneous nuclear ribonucleoproteins A2/B1 7.1% 2 2 37430.3
68 Q9UKD2 mRNA turnover protein 4 homolog 18.8% 4 4 27561.3
69 P67809 Nuclease-sensitive element-binding protein 1 23.5% 4 7 35923.8
70 O00567 Nucleolar protein 56 5.6% 2 2 66052.0
71 Q9Y2X3 Nucleolar protein 58 4.5% 3 3 59580.2
72 Q9UMY1 Nucleolar protein 7 16.7% 3 3 29426.9
73 Q86U42 Polyadenylate-binding protein 2 9.5% 3 3 32749.5
74 Q7L014 Probable ATP-dependent RNA helicase DDX46 1.0% 2 2 117366.1
75 Q99848 Probable rRNA-processing protein EBP2 15.7% 4 4 34852.9
76 O75526 RNA-binding motif protein, X-linked-like-2 5.6% 2 2 42816.1
77 P49756 RNA-binding protein 25 4.7% 3 3 100189.1
78 Q9Y5S9 RNA-binding protein 8A 21.8% 3 5 19889.4
79 Q9UKM9 RNA-binding protein Raly 5.9% 2 3 32463.9
80 Q9Y3B9 RRP15-like protein 10.3% 3 3 31484.5
81 Q13435 Splicing factor 3B subunit 2 3.0% 2 2 100229.4
82 Q07955 Splicing factor, arginine/serine-rich 1 37.9% 9 20 27745.1
83 O75494 Splicing factor, arginine/serine-rich 13A 8.8% 2 2 31301.7
84 Q8TF01 Splicing factor, arginine/serine-rich 18 3.4% 2 2 92578.3
85 Q01130 Splicing factor, arginine/serine-rich 2 12.7% 2 6 25477.1
86 Q9BRL6 Splicing factor, arginine/serine-rich 2B 7.5% 3 5 32288.5
87 P84103 Splicing factor, arginine/serine-rich 3 26.2% 4 5 19330.0
88 Q13243 Splicing factor, arginine/serine-rich 5 13.6% 3 3 31264.8
89 Q16629 Splicing factor, arginine/serine-rich 7 8.8% 2 2 27367.5
90 Q13242 Splicing factor, arginine/serine-rich 9 17.2% 4 4 25542.9
91 O75683 Surfeit locus protein 6 7.5% 3 3 41451.7
92 P62995 Transformer-2 protein homolog beta 17.0% 5 9 33666.7
93 P08621 U1 small nuclear ribonucleoprotein 70 kDa 12.1% 5 6 51558.4
94 O00566 U3 small nucleolar ribonucleoprotein protein MPP10 7.1% 4 4 78866.8
95 O43290 U4/U6.U5 tri-snRNP-associated protein 1 3.8% 2 2 90257.1
96 O95218 Zinc finger Ran-binding domain-containing protein 2 10.3% 3 3 37405.4
97 P62241 40S ribosomal protein S8 11.5% 2 2 Transcriptional Regulation/Translation 24206.4
98 P46781 40S ribosomal protein S9 9.8% 2 2 22592.5
99 P05387 60S acidic ribosomal protein P2 67.0% 4 5 11665.5
100 Q07020 60S ribosomal protein L18 12.2% 2 2 21635.2
101 P84098 60S ribosomal protein L19 17.9% 3 3 23467.4
102 P35268 60S ribosomal protein L22 18.8% 2 2 14787.3
103 P62829 60S ribosomal protein L23 17.9% 2 2 14865.9
104 P62750 60S ribosomal protein L23a 32.1% 5 9 17696.2
105 P83731 60S ribosomal protein L24 13.4% 2 3 17779.5
106 P47914 60S ribosomal protein L29 14.5% 2 3 17753.0
107 P62899 60S ribosomal protein L31 18.4% 2 2 14463.2
108 P18124 60S ribosomal protein L7 14.1% 4 5 29227.7
109 P39687 Acidic leucine-rich nuclear phosphoprotein 32 family member A 19.7% 6 8 28586.1
110 Q92688 Acidic leucine-rich nuclear phosphoprotein 32 family member B 13.5% 2 5 28788.7
111 P53999 Activated RNA polymerase II transcriptional coactivator p15 29.9% 3 3 14395.9
112 Q9NYF8 Bcl-2-associated transcription factor 1 4.2% 3 3 106125.3
113 P83916 Chromobox protein homolog 1 14.6% 2 2 21418.1
114 Q13185 Chromobox protein homolog 3 13.1% 2 2 20812.0
115 P45973 Chromobox protein homolog 5 10.0% 2 2 22225.6
116 Q5QJE6 Deoxynucleotidyltransferase terminal-interacting protein 2 6.2% 4 5 84471.1
117 P16989 DNA-binding protein A 7.5% 2 2 40089.4
118 Q8WXX5 DnaJ homolog subfamily C member 9 8.9% 2 2 29910.3
119 Q14919 Dr1-associated corepressor 10.2% 2 2 22350.4
120 P29692 Elongation factor 1-delta 8.9% 2 2 31121.9
121 P35269 General transcription factor IIF subunit 1 6.4% 2 2 58241.9
122 Q7Z4V5 Hepatoma-derived growth factor-related protein 2 6.7% 3 3 74318.3
123 Q99729 Heterogeneous nuclear ribonucleoprotein A/B 8.7% 3 3 36225.2
124 Q14103 Heterogeneous nuclear ribonucleoprotein D0 7.3% 2 2 38434.5
125 P17096 High mobility group protein HMG-I/HMG-Y 37.4% 5 14 11676.2
126 P52926 High mobility group protein HMGI-C 56.9% 4 7 11831.9
127 P50502 Hsc70-interacting protein 6.5% 2 2 41332.4
128 P17096-2 Isoform HMGA1b of High mobility group protein HMG-I/HMG-Y 14.6% 2 4 10679.2
129 P43243 Matrin-3 3.8% 2 2 94626.7
130 Q96DR8 Mucin-like protein 1 17.8% 2 2 9039.3
131 Q13765 Nascent polypeptide-associated complex subunit alpha 13.5% 2 3 23383.3
132 P23497 Nuclear autoantigen Sp-100 2.2% 2 100418.8
133 Q9H930 Nuclear body protein SP140-like protein 4.6% 2 2 50075.6
134 P17480 Nucleolar transcription factor 1 3.1% 2 2 89409.6
135 Q99733 Nucleosome assembly protein 1-like 4 9.3% 3 3 42823.9
136 O75475 PC4 and SFRS1-interacting protein 10.0% 4 5 60103.9
137 Q8NC51 Plasminogen activator inhibitor 1 RNA-binding protein 7.6% 3 3 44965.8
138 Q6NZI2 Polymerase I and transcript release factor 15.4% 4 4 43476.5
139 P51531 Probable global transcription activator SNF2L2 1.4% 2 2 181283.0
140 Q8IZL8 Proline-, glutamic acid- and leucine-rich protein 1 4.1% 2 2 119700.6
141 Q9NY61 Protein AATF 6.6% 3 3 63135.0
142 P35659 Protein DEK 6.7% 2 2 42675.9
143 Q96ST2 Protein IWS1 homolog 3.1% 2 2 91956.1
144 P61244 Protein max 14.4% 2 2 18275.3
145 P05109 Protein S100-A8 20.4% 2 2 10835.0
146 P06702 Protein S100-A9 24.6% 2 2 13242.3
147 Q58FF3 Putative endoplasmin-like protein 4.0% 2 2 45859.7
148 Q8WVC0 RNA polymerase-associated protein LEO1 3.0% 2 2 75405.3
149 Q9Y2W1 Thyroid hormone receptor-associated protein 3 5.6% 5 5 108668.9
150 Q14011 Cold-inducible RNA-binding protein 14.5% 2 2 18648.3
151 P35637 RNA-binding protein FUS 7.2% 2 2 53426.0
152 Q15059 Bromodomain-containing protein 3 2.8% 2 2 79542.5