Table 1. Illumina resequencing and assembly statistics of Zymoseptoria tritici isolates from the Swiss population.

Isolate	Number of reads	Coverage of reference genome (%)	Mean coverage at mapped positions (X)	Scaffold N50 (bp)	Longest scaffold (bp)	BioSample ID1	SRA sample ID
ST99CH3B8	6,145,362	87	11.11	109,481	475,584	[SAMN01815823]	[SRS383144]
ST99CH3C4	5′,709,810	88	10.17	98,927	493,063	[SAMN01815822]	[SRS383145]
ST99CH3D1	5,655,717	88	9.66	109,158	731,290	[SAMN01815821]	[SRS383146]
ST99CH3D7	5,814,117	86	10.96	136,993	539,729	[SAMN01815820]	[SRS383147]
ST99CH3F5	5,781,183	89	10.56	96,887	558,175	[SAMN01815819]	[SRS383148]
ST99CH1A5	8,114,322	89	15.79	91,984	665,994	[SAMN01815818]	[SRS383142]
ST99CH1E4	9,224,238	88	18.14	83,812	499,110	[SAMN01815817]	[SRS383143]
ST99CH9G4C	12,384,026	89	22.68	93,236	486,086	[SAMN01815816]	[SRS382972]
ST99CH9B8B	12,195,122	90	22.37	97,941	945,872	[SAMN01815815]	[SRS383009]

¹All samples were submitted under NCBI BioProject ID [PRJNA178194].