Table 2. Commercial and OpenSource software for the segmentation of biological and medical datasets.
| Name | Company | URL | License |
| ScanIP | Simpleware | http://www.simpleware.com/software/scanip/ | Commercial |
| Amira | Amira | http://www.amira.com | |
| Bioquant | Bioquant | http://www.bioquant.com | |
| ImagePro | Mediacy | http://www.mediacy.com | |
| ArivisBrowser | Arivis | http://www.arivis.de | |
| EM3D | Stanford | http://em3d.stanford.edu | OpenSource |
| TrakEM2 | University of Zurich | http://www.ini.uzh.ch/~acardona/trakem2.html | |
| Slicer | Slicer | http://www.slicer.org | |
| FreeSurfer | Harvard University | http://surfer.nmr.mgh.harvard.edu | |
| VANO | Vano | http://vano.cellexplorer.org/Home | |
| Imagesurfer | University of North Carolina | http://imagesurfer.cs.unc.edu | |
| KNOSSOS | Max-Planck Institute for MedicalResearch Heidelberg | http://www.knossostool.org | |
| Ilastik | HCI: Heidelberg Laboratory forImage Processing | http://www.ilastik.org | |