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. 2012 Nov 28;21(7):779–783. doi: 10.1038/ejhg.2012.242

Table 1. Associations between SNPs and either aPTT or APC resistance.

Trait SNP Chra Positionb Gene symbolc Tested allele N Ln effectd (95% CI) Effect in secondse(95% CI) P-valuef
aPTT rs2545801 5 176773945 F12 A 2498 0.05 (0.04, 0.06) 1.05 (1.04, 1.06) 1.39 × 10−59
aPTT rs1801020 5 176769138 F12 A 2505 0.05 (0.05, 0.06) 1.05 (1.05, 1.06) 1.55 × 10−59
aPTT rs17876032 5 176763233 F12 G 2507 0.04 (0.03, 0.04) 1.04 (1.03, 1.04) 1.40 × 10−37
aPTT rs710446 3 187942621 KNG1 G 2501 −0.03 (−0.03, −0.02) 0.97 (0.97, 0.98) 2.68 × 10−19
aPTT rs2228243 3 187877807 HRG G 2503 0.03 (0.02, 0.04) 1.03 (1.02, 1.04) 1.35 × 10−17
aPTT rs16860992 3 187876732 HRG C 2503 0.03 (0.02, 0.04) 1.03 (1.02, 1.04) 4.37 × 10−17
aPTT rs5030062 3 187936874 KNG1 C 2506 −0.02 (−0.03, −0.02) 0.98 (0.97, 0.98) 3.55 × 10−15
aPTT rs1621816 3 187921867 KNG1 G 2500 0.02 (0.02, 0.03) 1.02 (1.02, 1.03) 2.33 × 10−14
aPTT rs5030028 3 187928448 KNG1 A 2502 0.03 (0.02, 0.03) 1.03 (1.02, 1.03) 3.78 × 10−14
aPTT rs5030023 3 187927338 KNG1 A 2508 0.03 (0.02, 0.03) 1.03 (1.02, 1.03) 4.16 × 10−14
aPTT rs3856930 3 187941016 KNG1 A 2506 −0.02 (−0.03, −0.02) 0.98 (0.97, 0.98) 6.90 × 10−14
aPTT rs1624230 3 187921629 KNG1 A 2499 0.02 (0.02,0.03) 1.02 (1.02, 1.03) 9.47 × 10−14
aPTT rs657152 9 135129086 ABO A 2507 −0.02 (−0.03,−0.01) 0.98 (0.97, 0.99) 2.45 × 10−11
aPTT rs266723 3 187929741 KNG1 C 2501 0.02 (0.01, 0.02) 1.02 (1.01, 1.02) 3.31 × 10−10
aPTT rs7447593 5 176756743 F12 C 2504 −0.02 (−0.02, −0.01) 0.98 (0.98, 0.99) 1.81 × 10−09
aPTT rs7381103 5 176770918 F12 G 2510 0.05 (0.03, 0.07) 1.05 (1.03, 1.07) 4.35 × 10−09
aPTT rs651007 9 135143696 ABO A 2502 −0.02 (−0.03, −0.01) 0.98 (0.97, 0.99) 5.97 × 10−09
aPTT rs1042445 3 187878130 HRG A 2508 −0.02 (−0.03, −0.01) 0.98 (0.97, 0.99) 2.27 × 10−08
aPTT rs1624569 3 187932763 KNG1 G 2499 0.02 (0.01, 0.02) 1.02 (1.01, 1.02) 5.15 × 10−08
aPTT rs2062632 3 187943875 KNG1 G 2503 0.02 (0.01, 0.02) 1.02 (1.01, 1.02) 1.04 × 10−07
aPTT rs2287694 5 176792899 GRK6 G 2508 0.02 (0.02, 0.03) 1.02 (1.02, 1.03) 1.39 × 10−07
aPTT rs4253304 4 187410565 KLKB1 C 2498 −0.01 (−0.02, −0.01) 0.99 (0.98, 0.99) 1.67 × 10−07
aPTT rs13177732 5 176789531 GRK6 C 2500 −0.02 (−0.02, −0.01) 0.98 (0.98, 0.99) 2.56 × 10−07
aPTT rs9898 3 187873321 HRG A 2505 0.02 (0.01, 0.02) 1.02 (1.01, 1.02) 2.61 × 10−07
aPTT rs2304595 4 187409274 KLKB1 A 2507 −0.01 (−0.02, −0.01) 0.99 (0.98, 0.99) 3.60 × 10−07
aPTT rs5030091 3 187943571 KNG1 G 2507 0.01 (0.01, 0.02) 1.01 (1.01, 1.02) 7.29 × 10−07
APC-R rs6025 1 1.68E+08 F5 A 2500 −0.28 (−0.31, −0.26) 0.76 (0.73, 0.77) 4.2 × 10−104
APC-R rs6682179 1 1.68E+08 F5 A 2499 −0.08 (−0.1, −0.07) 0.92 (0.9, 1.07) 1.43 × 10−28
APC-R rs6427196 1 1.68E+08 F5 C 2500 −0.08 (−0.1, −0.07) 0.92 (0.9, 1.07) 2.11 × 10−28
APC-R rs6009 1 1.68E+08 F5 A 2500 −0.08 (−0.1, −0.07) 0.92 (0.9, 1.07) 1.24 × 10−27
APC-R rs16860992 3 1.88E+08 HRG C 2492 0.04 (0.03, 0.04) 1.04 (1.03, 1.04) 2.29 × 10−15
APC-R rs2228243 3 1.88E+08 HRG G 2492 0.03 (0.03, 0.04) 1.03 (1.03, 1.04) 9.55 × 10−15
APC-R rs9898 3 1.88E+08 HRG A 2496 0.02 (0.02, 0.03) 1.02 (1.02, 1.03) 5.26 × 10−11
APC-R rs2038024 1 1.68E+08 SLC19A2 C 2496 −0.03 (−0.04, −0.02) 0.97 (0.96, 0.98) 1.75 × 10−09
a

Chromosome (‘Chr').

b

Chromosomal position.

c

Mapped gene.

d

Logged effect sizes (as tested by regression).

e

Anti-logged effect sizes (for direct interpretation), where effect is change in trait per tested allele.

f

P-value indicates strength of evidence against the null hypothesis as tested by linear regression of trait on number of tested alleles.

Both aPTT and APC resistance (‘traits') are presented in this table.