Table 1. Associations between SNPs and either aPTT or APC resistance.
Trait | SNP | Chra | Positionb | Gene symbolc | Tested allele | N | Ln effectd (95% CI) | Effect in secondse(95% CI) | P-valuef |
---|---|---|---|---|---|---|---|---|---|
aPTT | rs2545801 | 5 | 176773945 | F12 | A | 2498 | 0.05 (0.04, 0.06) | 1.05 (1.04, 1.06) | 1.39 × 10−59 |
aPTT | rs1801020 | 5 | 176769138 | F12 | A | 2505 | 0.05 (0.05, 0.06) | 1.05 (1.05, 1.06) | 1.55 × 10−59 |
aPTT | rs17876032 | 5 | 176763233 | F12 | G | 2507 | 0.04 (0.03, 0.04) | 1.04 (1.03, 1.04) | 1.40 × 10−37 |
aPTT | rs710446 | 3 | 187942621 | KNG1 | G | 2501 | −0.03 (−0.03, −0.02) | 0.97 (0.97, 0.98) | 2.68 × 10−19 |
aPTT | rs2228243 | 3 | 187877807 | HRG | G | 2503 | 0.03 (0.02, 0.04) | 1.03 (1.02, 1.04) | 1.35 × 10−17 |
aPTT | rs16860992 | 3 | 187876732 | HRG | C | 2503 | 0.03 (0.02, 0.04) | 1.03 (1.02, 1.04) | 4.37 × 10−17 |
aPTT | rs5030062 | 3 | 187936874 | KNG1 | C | 2506 | −0.02 (−0.03, −0.02) | 0.98 (0.97, 0.98) | 3.55 × 10−15 |
aPTT | rs1621816 | 3 | 187921867 | KNG1 | G | 2500 | 0.02 (0.02, 0.03) | 1.02 (1.02, 1.03) | 2.33 × 10−14 |
aPTT | rs5030028 | 3 | 187928448 | KNG1 | A | 2502 | 0.03 (0.02, 0.03) | 1.03 (1.02, 1.03) | 3.78 × 10−14 |
aPTT | rs5030023 | 3 | 187927338 | KNG1 | A | 2508 | 0.03 (0.02, 0.03) | 1.03 (1.02, 1.03) | 4.16 × 10−14 |
aPTT | rs3856930 | 3 | 187941016 | KNG1 | A | 2506 | −0.02 (−0.03, −0.02) | 0.98 (0.97, 0.98) | 6.90 × 10−14 |
aPTT | rs1624230 | 3 | 187921629 | KNG1 | A | 2499 | 0.02 (0.02,0.03) | 1.02 (1.02, 1.03) | 9.47 × 10−14 |
aPTT | rs657152 | 9 | 135129086 | ABO | A | 2507 | −0.02 (−0.03,−0.01) | 0.98 (0.97, 0.99) | 2.45 × 10−11 |
aPTT | rs266723 | 3 | 187929741 | KNG1 | C | 2501 | 0.02 (0.01, 0.02) | 1.02 (1.01, 1.02) | 3.31 × 10−10 |
aPTT | rs7447593 | 5 | 176756743 | F12 | C | 2504 | −0.02 (−0.02, −0.01) | 0.98 (0.98, 0.99) | 1.81 × 10−09 |
aPTT | rs7381103 | 5 | 176770918 | F12 | G | 2510 | 0.05 (0.03, 0.07) | 1.05 (1.03, 1.07) | 4.35 × 10−09 |
aPTT | rs651007 | 9 | 135143696 | ABO | A | 2502 | −0.02 (−0.03, −0.01) | 0.98 (0.97, 0.99) | 5.97 × 10−09 |
aPTT | rs1042445 | 3 | 187878130 | HRG | A | 2508 | −0.02 (−0.03, −0.01) | 0.98 (0.97, 0.99) | 2.27 × 10−08 |
aPTT | rs1624569 | 3 | 187932763 | KNG1 | G | 2499 | 0.02 (0.01, 0.02) | 1.02 (1.01, 1.02) | 5.15 × 10−08 |
aPTT | rs2062632 | 3 | 187943875 | KNG1 | G | 2503 | 0.02 (0.01, 0.02) | 1.02 (1.01, 1.02) | 1.04 × 10−07 |
aPTT | rs2287694 | 5 | 176792899 | GRK6 | G | 2508 | 0.02 (0.02, 0.03) | 1.02 (1.02, 1.03) | 1.39 × 10−07 |
aPTT | rs4253304 | 4 | 187410565 | KLKB1 | C | 2498 | −0.01 (−0.02, −0.01) | 0.99 (0.98, 0.99) | 1.67 × 10−07 |
aPTT | rs13177732 | 5 | 176789531 | GRK6 | C | 2500 | −0.02 (−0.02, −0.01) | 0.98 (0.98, 0.99) | 2.56 × 10−07 |
aPTT | rs9898 | 3 | 187873321 | HRG | A | 2505 | 0.02 (0.01, 0.02) | 1.02 (1.01, 1.02) | 2.61 × 10−07 |
aPTT | rs2304595 | 4 | 187409274 | KLKB1 | A | 2507 | −0.01 (−0.02, −0.01) | 0.99 (0.98, 0.99) | 3.60 × 10−07 |
aPTT | rs5030091 | 3 | 187943571 | KNG1 | G | 2507 | 0.01 (0.01, 0.02) | 1.01 (1.01, 1.02) | 7.29 × 10−07 |
APC-R | rs6025 | 1 | 1.68E+08 | F5 | A | 2500 | −0.28 (−0.31, −0.26) | 0.76 (0.73, 0.77) | 4.2 × 10−104 |
APC-R | rs6682179 | 1 | 1.68E+08 | F5 | A | 2499 | −0.08 (−0.1, −0.07) | 0.92 (0.9, 1.07) | 1.43 × 10−28 |
APC-R | rs6427196 | 1 | 1.68E+08 | F5 | C | 2500 | −0.08 (−0.1, −0.07) | 0.92 (0.9, 1.07) | 2.11 × 10−28 |
APC-R | rs6009 | 1 | 1.68E+08 | F5 | A | 2500 | −0.08 (−0.1, −0.07) | 0.92 (0.9, 1.07) | 1.24 × 10−27 |
APC-R | rs16860992 | 3 | 1.88E+08 | HRG | C | 2492 | 0.04 (0.03, 0.04) | 1.04 (1.03, 1.04) | 2.29 × 10−15 |
APC-R | rs2228243 | 3 | 1.88E+08 | HRG | G | 2492 | 0.03 (0.03, 0.04) | 1.03 (1.03, 1.04) | 9.55 × 10−15 |
APC-R | rs9898 | 3 | 1.88E+08 | HRG | A | 2496 | 0.02 (0.02, 0.03) | 1.02 (1.02, 1.03) | 5.26 × 10−11 |
APC-R | rs2038024 | 1 | 1.68E+08 | SLC19A2 | C | 2496 | −0.03 (−0.04, −0.02) | 0.97 (0.96, 0.98) | 1.75 × 10−09 |
Chromosome (‘Chr').
Chromosomal position.
Mapped gene.
Logged effect sizes (as tested by regression).
Anti-logged effect sizes (for direct interpretation), where effect is change in trait per tested allele.
P-value indicates strength of evidence against the null hypothesis as tested by linear regression of trait on number of tested alleles.
Both aPTT and APC resistance (‘traits') are presented in this table.