Table 3.
template base | dNTP | Km (µM) | kcat (s−1) | kcat/Km (mM−1 s−1) | fins a | relative effciencyb |
---|---|---|---|---|---|---|
G | A | 880 ± 80 | 0.0028 ± 0.00009 | 0.0032 | 0.0001 | 1 × 10−4 |
T | 940 ± 220 | 0.021 ± 0.002 | 0.022 | 0.00071 | 7.1 × 10−4 | |
G | 430 ± 50 | 0.0045 ± 0.0002 | 0.01 | 0.00032 | 3.2 × 10−4 | |
C | 12 ± 3 | 0.38 ± 0.02 | 31 | 1 | 1 | |
N2-MeG | A | 790 ± 30 | 0.0027 ± 0.00004 | 0.0034 | 0.00015 | 1.1 × 10−4 |
T | 1300 ± 200 | 0.025 ± 0.002 | 0.019 | 0.00083 | 6.1 × 10−4 | |
G | 250 ± 30 | 0.0049 ± 0.0002 | 0.019 | 0.00083 | 6.1 × 10−4 | |
C | 4.1 ± 1.8 | 0.092 ± 0.006 | 23 | 1 | 7.4 × 10−1 | |
N2-BzG | A | 590 ± 90 | 0.0016 ± 0.00008 | 0.0026 | 0.0011 | 8.4 × 10−5 |
T | 110 ± 80 | 0.00019 ± 0.00005 | 0.0016 | 0.00067 | 5.2 × 10−5 | |
G | 50 ± 16 | 0.0016 ± 0.0001 | 0.03 | 0.0125 | 9.7 × 10−4 | |
C | 26 ± 7 | 0.0062 ± 0.004 | 2.4 | 1 | 7.7 × 10−2 | |
O6-MeG | A | 2200 ± 300 | 0.0036 ± 0.0002 | 0.0016 | 0.013 | 5.2 × 10−5 |
T | 3800 ± 1200 | 0.063 ± 0.01 | 0.017 | 0.14 | 5.5 × 10−4 | |
G | 12 ± 5 | 0.00032 ± 0.00002 | 0.027 | 0.23 | 8.7 × 10−4 | |
C | 45 ± 12 | 0.0055 ± 0.0004 | 0.12 | 1 | 3.9 × 10−3 | |
O6-BzG | A | 1200 ± 200 | 0.0012 ± 0.00007 | 0.001 | 0.0091 | 3.2 × 10−5 |
T | 870 ± 40 | 0.0023 ± 0.00004 | 0.0026 | 0.024 | 8.4 × 10−5 | |
G | 77 ± 23 | 0.00055 ± 0.00004 | 0.0065 | 0.059 | 2.1 × 10−4 | |
C | 52 ± 20 | 0.0057 ± 0.0005 | 0.11 | 1 | 3.5 × 10−3 | |
AP site | A | 1100 ± 200 | 0.021 ± 0.003 | 0.02 | 0.24 | 6.5 × 10−4 |
T | 8900 ± 800 | 0.025 ± 0.002 | 0.0028 | 0.034 | 9.0 × 10−5 | |
G | 600 ± 140 | 0.0033 ± 0.0002 | 0.0055 | 0.066 | 1.8 × 10−4 | |
C | 27 ± 8 | 0.0022 ± 0.0002 | 0.083 | 1 | 2.7 × 10−3 |
Misinsertion frequency, calculated by dividing kcat/Km for dNTP incorporation by the kcat/Km for dCTP incorporation opposite each template base.
Relative insertion efficiency, calculated by dividing kcat/Km for dNTP incorporation opposite each template base by the kcat/Km for dCTP incorporation opposite template G.