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. 2004 Mar;70(3):1397–1404. doi: 10.1128/AEM.70.3.1397-1404.2004

TABLE 3.

Properties of T. maritima AI and other microbial AIs determined from a comparison of the deduced amino acid sequences

Enzyme source Amino acid frequencies (%)a
Theoretical pI GRAVY indexb Aliphatic index
Charged amino acids Acidic amino acids Basic amino acids Polar amino acids Hydrophobic amino acids Aromatic amino acids
T. maritima 31.6 14.9 14.1 14.4 37.2 9.0 5.90 −0.302 91.79
T. neapolitana 30.2 14.7 12.9 14.2 37.7 9.0 5.90 −0.307 92.02
G. stearothermophilus 27.7 14.3 10.2 16.4 36.9 9.4 5.31 −0.224 83.76
B. halodurans 28.3 14.7 10.0 17.2 37.0 9.2 5.24 −0.288 86.38
B. subtilis 29.0 14.4 11.0 18.6 32.8 9.2 5.56 −0.393 80.50
S. enterica serovar Typhimurium 25.2 11.8 9.2 20.4 37.6 9.0 5.88 −0.201 87.80
M. smegmatis 24.8 13.2 8.2 19.8 36.8 7.8 5.05 −0.154 83.33
E. coli 24.8 11.6 9.0 21.0 36.8 9.0 5.88 −0.209 85.44
a

The charged amino acids are arginine, lysine, histidine, aspartic acid, and glutamic acid; the acidic amino acids are aspartic acid and glutamic acid; the basic amino acids are lysine and arginine; the polar amino acids are asparagine, cysteine, glutamine, serine, and threonine; the hydrophobic amino acids are alanine, isoleucine, leucine, phenylalanine, tryptophan, and valine; and the aromatic amino acids are phenylalanine, tryptophan, and tyrosine.

b

GRAVY, grand average of hydropathicity.