TABLE 3.
Properties of T. maritima AI and other microbial AIs determined from a comparison of the deduced amino acid sequences
| Enzyme source | Amino acid frequencies (%)a
|
Theoretical pI | GRAVY indexb | Aliphatic index | |||||
|---|---|---|---|---|---|---|---|---|---|
| Charged amino acids | Acidic amino acids | Basic amino acids | Polar amino acids | Hydrophobic amino acids | Aromatic amino acids | ||||
| T. maritima | 31.6 | 14.9 | 14.1 | 14.4 | 37.2 | 9.0 | 5.90 | −0.302 | 91.79 |
| T. neapolitana | 30.2 | 14.7 | 12.9 | 14.2 | 37.7 | 9.0 | 5.90 | −0.307 | 92.02 |
| G. stearothermophilus | 27.7 | 14.3 | 10.2 | 16.4 | 36.9 | 9.4 | 5.31 | −0.224 | 83.76 |
| B. halodurans | 28.3 | 14.7 | 10.0 | 17.2 | 37.0 | 9.2 | 5.24 | −0.288 | 86.38 |
| B. subtilis | 29.0 | 14.4 | 11.0 | 18.6 | 32.8 | 9.2 | 5.56 | −0.393 | 80.50 |
| S. enterica serovar Typhimurium | 25.2 | 11.8 | 9.2 | 20.4 | 37.6 | 9.0 | 5.88 | −0.201 | 87.80 |
| M. smegmatis | 24.8 | 13.2 | 8.2 | 19.8 | 36.8 | 7.8 | 5.05 | −0.154 | 83.33 |
| E. coli | 24.8 | 11.6 | 9.0 | 21.0 | 36.8 | 9.0 | 5.88 | −0.209 | 85.44 |
The charged amino acids are arginine, lysine, histidine, aspartic acid, and glutamic acid; the acidic amino acids are aspartic acid and glutamic acid; the basic amino acids are lysine and arginine; the polar amino acids are asparagine, cysteine, glutamine, serine, and threonine; the hydrophobic amino acids are alanine, isoleucine, leucine, phenylalanine, tryptophan, and valine; and the aromatic amino acids are phenylalanine, tryptophan, and tyrosine.
GRAVY, grand average of hydropathicity.