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. 2013 Jun;19(6):740–751. doi: 10.1261/rna.035279.112

FIGURE 3.

FIGURE 3.

Performance analysis of small RNA clustering by ShortStack. (A) Receiver operating characteristic (ROC) curves based on ShortStack analyses of the col_leaf data set in --nohp mode, using the indicated values of options --pad and --mindepth. (TPR) True positive rate, (FPR) false positive rate. Filled triangle indicates default settings. (B) Number of small RNA loci from the col_leaf data set annotated by ShortStack with the indicated settings of --pad and --mindepth. Filled circle indicates default settings.