Table 1.

High Confidence Regulatory Polymorphisms.

Motif	Downstream Gene	Log(Difference in Expression)	Distance Upstream of Gene (bp)	q Value
HCM1	YJL155C	−0.26	300	0.04
HCM1	YEL044W	−0.27	955	0.04
MOT3	YKL059C	0.29	509	0.04
PHO2	YJR108W	0.57	144	0.04
PHO2	YGL169W	−0.32	381	0.04
REB1	YNL239W	0.47	239	0.04
SPT2	YEL001C	0.24	675	0.04
YAP5	YOR108W	−0.59	436	0.04
CRZ1	YAL049C	0.39	146	0.06
HAL9	YPL255W	−0.32	494	0.06
HAP2	YNR049C	0.27	28	0.06
HAP2	YOR071C	−0.44	2,828	0.06
PHO2	YPR119W	−0.12	331	0.06
RAP1	YPL108W	0.48	407	0.06
REB1	YNL240C	0.59	352	0.06
STE12	YKL108W	−0.28	91	0.06
FHL1	YJL094C	−0.77	148	0.07
HAP2	YBR222C	0.39	245	0.07
HAP2	YGL117W	−0.71	1,245	0.07
MOT3	YLR152C	−0.67	242	0.07
ABF2	YPL167C	−0.24	116	0.09
YAP3	YLR007W	−0.16	366	0.09