Table 1.
Composition of resident microbiota in D. melanogaster reared on a CT-free diet and a +CT diet, determined by 16S rRNA gene sequence analysis of bacterial colonies cultured on nutrient agar
| NCBI accession no. of sequences recovered | Accession no. of NCBI sequence with identity | Taxonomic identity | % sequence identity | No. of bacterial colonies |
|
|---|---|---|---|---|---|
| CT-free diet (n = 33) | +CT diet (n = 30) | ||||
| KC485830–KC485840, KC485851–KC485862 | GQ359863.1 | Acetobacter sp. strain 6-C-2 16S rRNA gene, partial sequence | 98–99 | 11 | 12 |
| KC485818–KC485819 | NR_025512.1 | Acetobacter cerevisiae strain LMG 1625 16S rRNA, partial sequence | 97–99 | 2 | 0 |
| KC485872 | HM218620.1 | Acetobacter malorum strain NM156-4 16S rRNA gene, partial sequence | 98–99 | 0 | 1 |
| KC485841–KC485842, KC485871 | FJ227313.1 | Acetobacter pasteurianus strain bh12 16S rRNA gene, partial sequence | 96–98 | 2 | 1 |
| KC485843–KC485849, KC485873–KC485874 | FN429068.1 | Acetobacter pasteurianus strain SX461 16S rRNA gene, partial sequence | 96–99 | 7 | 2 |
| KC485850 | FN429074.1 | Acetobacter pasteurianus strain ZJ362 16S rRNA gene, partial sequence | 97 | 1 | 0 |
| KC485821–KC485829, KC485863–KC485870 | EU096229.1 | Acetobacter pomorum strain EW816 16S rRNA gene, partial sequence | 97–99 | 9 | 8 |
| KC485878 | GU369767.1 | Lactobacillus brevis strain JS-7-2 16S rRNA gene, partial sequence | 99 | 0 | 1 |
| KC485879 | FJ227317.1 | Lactobacillus brevis strain b4 16S rRNA gene, partial sequence | 98 | 0 | 1 |
| KC485875, KC485876 | GU253891.1 | Lactobacillus pentosus strain N3 16S rRNA gene, partial sequence | 98 | 0 | 2 |
| KC485880 | AB494721.1 | Lactobacillus plantarum strain KL23 16S rRNA gene, partial sequence | 99 | 0 | 1 |
| KC485877 | HM449702.1 | Micrococcus luteus strain PCSB6 16S rRNA gene, partial sequence | 97 | 0 | 1 |
| KC485820 | DQ981281.1 | Uncultured bacterium clone thom_c06 16S rRNA gene, partial sequence | 98 | 1 | 0 |