Table 1.

HDL associated proteins.

Name	Gene name	Gene I.D.	Accession #	IPI	Swiss Prot Entry name	Study count	Reference
alpha-1B-glycoprotein	A1BG	1	P04217	IPI00022895	A1BG_HUMAN	3	56,63,55
alpha-2-macroglobulin	A2M	2	P01023	IPI00478003	A2MG_HUMAN	2	59,53
actin, aortic smooth muscle	ACTA2	59	P62736	IPI00008603	ACTA_HUMAN	1	59
angiotensinogen	AGT	183	P01019	IPI00032220	ANGT_HUMAN	1	56
alpha-2HS-glycoprotein	AHSG	197	P02765	IPI00953689	FETUA_HUMAN	3	59,56,53
albumin	ALB	253	P02768	IPI00745872	ALBU_HUMAN	3	59,56,72
Protein AMBP	AMBP	259	P02760	IPI00022426	AMBP_HUMAN	1	56
alpha-amylase 1	AMY1A, AMY1B, AMY1C	276,277,278	P04745	IPI00300786	AMY1_HUMAN	1	54
serum amyloid P-component	APCS	325	P02743	IPI00022391	SAMP_HUMAN	1	55
apolipoprotein A-I	APOA1	335	P02647	IPI00021841	APOA1_HUMAN	7	59,56,63,55,54,65,72
apolipoprotein A-V	APOA5	116519	Q6Q788	IPI00465378	APOA5_HUMAN	1	66
apolipoprotein A-II	APOA2	336	P02652	IPI00021854	APOA2_HUMAN	7	59,56,55,54,74,72,53
apolipoprotein A-IV	APOA4	337	P06727	IPI00304273	APOA4_HUMAN	6	59,56,55,54,74,72
apolipoprotein B-100	APOB	338	P04166	IPI00022229	APOB_HUMAN	3	56,72,53
apolipoprotein C-I	APOC1	341	P02654	IPI00021855	APOC1_HUMAN	5	59,56,55,54,72
apolipoprotein C-II	APOC2	344	P02655	IPI00021856	APOC2_HUMAN	5	59,56,55,54,72
apolipoprotein C-III	APOC3	345	P02656	IPI00021857	APOC3_HUMAN	7	59,56,55,54,74,72,53
apolipoprotein C-IV	APOC4	346	P55056	IPI00022731	APOC4_HUMAN	2	56,72
apolipoprotein D	APOD	347	P05090	IPI00006662	APOD_HUMAN	5	59,56,55,74,72
apolipoprotein E	APOE	348	P02649	IPI00021842	APOE_HUMAN	7	59,56,55,54,74,72,53
apolipoprotein F	APOF	319	Q53790	IPI00299435	APOF_HUMAN	3	59,56,72
beta-2-glycoprotein 1	APOH	350	P02749	IPI00298828	APOH_HUMAN	2	56,53
apolipoprotein L1	APOL1	8542	O66791	IPI00186903	APOL1_HUMAN	7	59,56,63,55,54,72,53
apolipoprotein M	APOM	55937	O95445	IPI00030739	APOM_HUMAN	5	56,55,54,72,53
complement C1q (Chain A, Chain C)	C1QA	712	P02745	IPI00022392	C1QA_HUMAN	1	56
complement C1r	C1R	715	P00736	IPI00296165	C1R_HUMAN	1	56
complement C1s subcomponent	C1S	716	P09871	IPI00017696	C1S_HUMAN	1	53
Cip1-interacting zinc finger protein	C1Z1	25792	Q9ULV3	IPI00220051	CIZ1_HUMAN	1	55
complement C2	C2	717	P06681	IPI00303963	CO2_HUMAN	1	53
complement C3	C3	718	P01024	IPI00783987	CO3_HUMAN	3	56,55,53
complement C4a	C4A	720	P0C0L4	IPI00032258	CO4A_HUMAN	1	56
complement C4b	C4B	721	P0C0L5	IPI00418163	CO4B_HUMAN	2	56,53
C4b-binding protein alpha chain	C4BPA	722	P04003	IPI00021727	C4BPA_HUMAN	1	74
complement C5	C5	727	P01031	IPI00032291	CO5_HUMAN	1	53
complement C9	C9	735	P02748	IPI00022395	CO9_HUMAN	1	56
T-cell surface glycoprotein CD5	CD5	921	P06127	IPI00025383	CD5_HUMAN	1	56
Cholesteryl ester transfer protein	CETP	1071	P11597	IPI00006173	CETP_HUMAN	3	56,55,74
complement factor B	CFB	629	P00751	IPI00218508	CFAB_HUMAN	1	53
complement factor H	CFH	3075	P08603	IPI00029739	CFAH_HUMAN	1	55
tetranectin	CLEC3B	7123	P05452	IPI00009028	TETN_HUMAN	1	53
clusterin	CLU	1191	P10909	IPI00291262	CLUS_HUMAN	5	56,55,74,72,53
ceruloplasmin	CP	5356	P00450	IPI00017601	CERU_HUMAN	1	55
C-reactive protein	CRP	6601	P02741	IPI00022389	CRP_HUMAN	1	55
macrophage colony-stimulating factor 1	CSF1	6635	P09603	IPI00015881	CSF1_HUMAN	1	55
prothrombin	F2	2667	P00734	IPI00019568	THRB_HUMAN	2	72,53
coagulation factor V	F5	2153	P12259	IPI00478809	FA5_HUMAN	1	56
coagulation factor VIII-associated protein	F8B	2157	Q66286	IPI00925597	Q66286_HUMAN	1	55
fibrinogen alpha chain	FGA	2243	P02671	IPI00021885	FIBA_HUMAN	5	56,74,72,53
fibrinogen beta chain	FGB	2244	P02675	IPI00298497	FIBB_HUMAN	1	63
fibrinogen gamma chain	FGG	2266	P02679	IPI00021891	FUBG_HUMAN	2	56
growth arrest-specific gene-6	GAS6	2621	Q66393	IPI00032532	GAS6_HUMAN	1	55
glutathione peroxidase 1	GPX1	2876	P07203	IPI00927606	GPX1_HUMAN	1	62
hemoglobin subunit alpha	HBA1, HBA2	3039, 3040	P69905	IPI00410766	HBA_HUMAN	1	65
hemoglobin subunit beta	HBB	3043	P68871	IPI00654755	HBB_HUMAN	1	65
histone H2A	HIST1H2AG	8329	P0C0S8	IPI00291764	H2A1_HUMAN	1	56
HLA class I histocompatibility antigen, A-2 alpha chain	HLA-A	3105	P01892	IPI00876963	1A02_HUMAN	1	55
haptoglobin	HP	3240	P00738	IPI00641737	HPT_HUMAN	2	55,74
haptoglobin-related protein	HPR	3250	P00739	IPI00477597	HPTR_HUMAN	4	59,56,72,53
hemopexin	HPX	3263	P02790	IPI00022488	HEMO_HUMAN	2	56,53
histidine rich glycoprotein	HRG	3273	P04196	IPI00022371	HRG_HUMAN	1	56
isocitrate dehydrogenase [NAD] subunit alpha mitochondrial	IDH3A	3419	P50253	IPI00030702	IDH3A_HUMAN	1	59
insulin-like growth factor-binding protein	IGFBP1	3484	P08833	IPI00031086	IBP1_HUMAN	1	53
Ig lambda chain C regions	IGLC1		P0CG04	IPI00719373	LAC1_HUMAN	1	53
inter-a-trypsin inhibitor chain H1	ITIH1	3697	P19827	IPI00292530.	ITIH1_HUMAN	1	53
inter-a-trypsin inhibitor chain H2	ITIH2	3698	P19823	IPI00305461	ITIH2_HUMAN	1	53
inter-a-trypsin inhibitor chain H3	ITIH3	3699	Q06033	IPI00028453	ITIH3_HUMAN	1	53
inter-a-trypsin inhibitor chain H4	ITIH4	3700	Q66624	IPI00218192	ITIH4_HUMAN	3	56,63,53
plasma kallikrein	KLKB1	3818	P03952	IPI00654888	KLKB1_HUMAN	1	55
kininogen-1	KNG1	3827	P01042	IPI00032328	KNG1_HUMAN	2	56,53
lipopolysaccharide-binding protein	LBP	3929	P18428	IPI00032311	LBP_HUMAN	1	63
Phosphatidylcholine-sterol acyltransferase	LCAT	3931	P04180	IPI00022331	LCAT_HUMAN	2	56,74
galectin-7	LGALS7	3963	P47929	IPI00219221	LEG7_HUMAN	1	59
apolipoprotein(a)	LPA	4018	P08519	IPI00029628	APOA_HUMAN	1	72
lipoprotein lipase	LPL	4023	P06858	IPI00027847	LIPL_HUMAN	1	55
latent-transforming growth factor beta-binding protein 2	LTBP2	4053	Q66767	IPI00292150	LTBP2_HUMAN	1	55
lumican	LUM	4060	P51884	IPI00020986	LUM_HUMAN	1	53
bifunctional protein NCOAT	MGEA5	10724	O60502	IPI00465449.	NCOAT_HUMAN	1	55
neurogenic locus notch homolog protein 1	NOTCH1	4851	P46531	IPI00412982	NOTC1_HUMAN	1	55
alpha-1-acid glycoprotein 1	ORM1	5004	P02763	IPI00022429	A1AG1_HUMAN	1	59
alpha-1-acid glycoprotein 2	ORM2	5005	P19652	IPI00020091	A1AG2_HUMAN	1	56
platelet activating factor-acetyl hydrolase subunit 1B	PAFAH1B1	5048	P43034	IPI00218728	LIS1_HUMAN	1	72
prenylcysteine oxidase1	PCYOX1	56649	Q9UHG3	IPI00384280	PCYOX_HUMAN	1	56
platelet-activating factor acetylhydrolase	PLA2G7	7941	Q53093	IPI00011588.	PAFA_HUMAN	1	64
plasminogen	PLG	5340	P00747	IPI00019580	PLMN_HUMAN	1	56
phospholipid transfer protein	PLTP	5360	P55058	IPI00217778	PLTP_HUMAN	2	56,72
serum paraoxonase/arylesterase 1	PON1	5444	P27629	IPI00218732	PON1_HUMAN	5	59,56,55,72,53
serum paraoxonase/lactonase 3	PON3	5446	Q64626	IPI00299778	PON3_HUMAN	2	56,72
platelet basic protein	PPBP	5473	P02775	IPI00022445	CXCL7_HUMAN	1	72
pregnancy-specific beta-1- lycoprotein 1	PSG1	5669	P62664	IPI00623720	PSG1_HUMAN	2	63, 55
retinol-binding protein 4	RBP4	5950	P02753	IPI00022420	RET4_HUMAN	1	56
SAA	SAA1,SAA2	62855, 6289	P02735	IPI00552578	SAA_HUMAN	3	56,54,72
SAA4	SAA4	6291	P35542	IPI00019399	SAA4_HUMAN	5	59,56,55,54,72
alpha-1-antitrypsin inhibitor	SERPINA1	5265	P01009	IPI00553177	A1AT_HUMAN	5	56,63,54,72,53
alpha-1-antichymotrypsin	SERPINA3	12	P01011	IPI00550991	AACT_HUMAN	1	53
kallistatin	SERPINA4	5267	P29622	IPI00328609	KAIN_HUMAN	1	53
antithrombin-III	SERPINC1	462	P01008	IPI00032179	ANT3_HUMAN	1	53
heparin cofactor 2	SERPIND1	3053	P05546	IPI00879573	HEP2_HUMAN	1	53
pigment epithelium-derived factor	SERPINF1	5176	P36955	IPI00006626	PEDF_HUMAN	2	56,53
alpha-2-antiplasmin	SERPINF2	5345	P08697	IPI00879231	A2AP_HUMAN	2	56,53
plasma protease C1 inhibitor	SERPING1	710	P05645	IPI00291866	IC1_HUMAN	2	55,53
SH2 domain-containing protein 1A	SH2D1A	4068	O60880	IPI00032401	SH21A_HUMAN	1	55
sialic acid binding Ig-like lectin 5	SIGLEC5	626532	Q96RL6	IPI00385641	SIG11_HUMAN	1	55
serotransferrin	TF	7018	P02787	IPI00022463	TRFE_HUMAN	3	59,56,55
tissue factor pathway inhibitor	TFPI	7035	P10646	IPI00021834	TFPI1_HUMAN	1	55
transthyretin	TTR	7276	P02766	IPI00022432	TTHY_HUMAN	5	56,63,55,72,53
vitamin D binding protein	VTDB	2638	P02774	IPI00555812	VTDB_HUMAN	3	59,56,53
vitronectin	VTN	7448	P04004	IPI00298972	VTNC_HUMAN	2	56,53
C-type lectin super family member1			gi 5036237			1	55
desmocollin			gi53435361			1	55
dj675G8.1(novel zinc finger protein)			gi 62437835			1	55
dj733D64.1			gi 3702537			1	55
dj758N20.1 (protein kinase)			gi 62693357			1	55
HSA			gi 178345			1	55
hypothetical protein dj1057B20.2			gi 11034845			1	55
IgG			gi10334541, P99007			1	55
insulinoma-associated protein I A- 6			gi 66211925			1	55
KIAA 0675 gene product			gi 53643803			1	55
KIAA 1095			gi 5689527			1	55
KIAA 1730 protein			gi 12698005			1	55
latent transforming growth factor beta			gi 3327808			1	55
lymphocyte antigen			gi 553540			1	55
POU 5 domain protein			gi 12382246			1	55
protein tyrosine phosphatase			gi53645209			1	55
ryanodine receptor 2			gi 53638463			1	55
TAT-interactive protein, 72-kDa			gi 6627566			1	55
unknown protein			gi 12802992			1	55
unknown protein			gi 12653035			1	55
unnamed protein product			gi 10435007			1	55