Table 4.
SNPs associated with cow conception ratea
|
SNP |
Gene |
Least-squares means (SEM) |
Linear |
Dominance |
|||||
|---|---|---|---|---|---|---|---|---|---|
| 0 | 1 | 2 | Effect | P value | Q value | P value | Q value | ||
| rs109967779 |
ACAT2 |
1.89 (1.09) |
1.03 (1.03) |
−0.61 (−0.61) |
−1.34 |
0.0216 |
0.0334 |
0.6559 |
0.3915 |
| rs133700190 |
AP3B1 |
3.89 (1.95) |
1.93 (0.78) |
−0.82 (0.59) |
−2.58 |
0.0004 |
0.0023 |
0.7487 |
0.3915 |
| rs41766835 |
APBB1 |
2.78 (1.98) |
1.64 (0.84) |
−0.19 (0.60) |
−1.67 |
0.0255 |
0.0361 |
0.7889 |
0.3915 |
| rs110541595 |
ARL6IP1 |
−0.23 (1.09) |
1.90 (0.69) |
−0.97 (0.76) |
−0.84 |
0.1781 |
0.1081 |
0.0059 |
0.1180 |
| rs109669573 |
BCAS1 |
−1.68 (1.00) |
1.01 (0.67) |
1.16 (0.76) |
1.24 |
0.0359 |
0.0421 |
0.1387 |
0.3915 |
| rs135390325 |
C1QB |
−2.74 (6.74) |
−2.20 (0.99) |
1.26 (0.51) |
3.35 |
0.0012 |
0.0058 |
0.6761 |
0.3915 |
| rs137601357 |
CAST |
−1.33 (0.98) |
0.06 (0.65) |
2.01 (0.76) |
1.71 |
0.0032 |
0.0086 |
0.7283 |
0.3915 |
| rs109447102 |
CCDC86 |
−2.22 (2.06) |
−0.40 (0.82) |
1.14 (0.57) |
1.60 |
0.0324 |
0.0408 |
0.9181 |
0.3992 |
| rs137673698 |
CCT8 |
−10.00 (9.38) |
0.18 (0.52) |
4.14 (1.66) |
4.16 |
0.0120 |
0.0204 |
0.5150 |
0.3915 |
| rs41857027 |
CFDP2 |
−3.70 (1.31) |
0.78 (0.93) |
0.87 (0.48) |
1.65 |
0.0068 |
0.0128 |
0.0517 |
0.3915 |
| rs109301586 |
COQ9 |
−1.53 (0.83) |
0.51 (0.73) |
2.58 (0.79) |
2.06 |
0.0002 |
0.0014 |
0.9796 |
0.4125 |
| rs134432442 |
CPSF1 |
−3.08 (1.77) |
−0.14 (0.76) |
1.26 (0.60) |
1.77 |
0.0111 |
0.0199 |
0.5051 |
0.3915 |
| rs133449166 |
CSNK1E |
2.02 (1.03) |
0.77 (0.67) |
−1.42 (0.75) |
−1.80 |
0.0026 |
0.0086 |
0.5917 |
0.3915 |
| rs109443582 |
CSPP1 |
1.04 (6.88) |
−2.44 (1.23) |
0.97 (0.56) |
3.01 |
0.0026 |
0.0086 |
0.5917 |
0.3915 |
| rs41893756 |
FUT1 |
−1.16 (1.79) |
−1.29 (0.82) |
1.56 (0.57) |
2.10 |
0.0033 |
0.0086 |
0.2157 |
0.3915 |
| rs109516714 |
GPLD1 |
−2.36 (1.06) |
0.67 (0.68) |
1.40 (0.75) |
1.67 |
0.0055 |
0.0110 |
0.1921 |
0.3915 |
| rs110828053 |
HSD17B7 |
1.96 (2.01) |
2.17 (0.78) |
−0.55 (0.57) |
−2.10 |
0.0039 |
0.0091 |
0.2472 |
0.3915 |
| rs111015912 |
LDB3 |
4.74 (1.94) |
1.56 (0.74) |
−0.28 (0.59) |
−2.12 |
0.0029 |
0.0086 |
0.5836 |
0.3915 |
| rs134011564 |
MARVELD1 |
2.54 (6.20) |
0.72 (0.54) |
−2.83 (1.13) |
−3.48 |
0.0029 |
0.0086 |
0.7852 |
0.3915 |
| rs41859871 |
MON1B |
7.15 (3.85) |
1.56 (0.92) |
−0.01 (0.54) |
−1.96 |
0.0296 |
0.0387 |
0.3455 |
0.3915 |
| rs133762601 |
NEU3 |
−2.06 (1.13) |
−1.56 (1.76) |
1.03 (0.56) |
1.62 |
0.0050 |
0.0106 |
0.5700 |
0.3915 |
| rs133497176 |
NFKBIL1 |
−2.45 (2.57) |
−1.24 (0.93) |
0.81 (0.54) |
1.90 |
0.0251 |
0.0361 |
0.7873 |
0.3915 |
| rs134264563 |
OCLN |
1.70 (1.49) |
1.11 (0.68) |
−0.57 (0.63) |
−1.37 |
0.0352 |
0.0421 |
0.5920 |
0.3915 |
| rs111027720 |
PARM1 |
4.31 (0.89) |
0.39 (0.64) |
−2.30 (0.77) |
−3.25 |
<0.0001 |
0.0010 |
0.4499 |
0.3915 |
| rs109629628 |
PMM2 |
3.09 (1.13) |
1.10 (0.64) |
−1.29 (0.71) |
−2.24 |
0.0002 |
0.0014 |
0.8245 |
0.3915 |
| rs133729105 |
RABEP2 |
−1.44 (1.07) |
−0.14 (0.67) |
1.79 (0.70) |
1.68 |
0.004 |
0.0091 |
0.7211 |
0.3915 |
| rs136746215 |
SEC14L1 |
−1.70 (1.02) |
3.44 (1.23) |
0.83 (0.72) |
0.98 |
0.0988 |
0.0819 |
0.0037 |
0.1180 |
| rs43321188 |
SERPINE2 |
4.29 (1.51) |
0.09 (0.73) |
0.24 (0.60) |
−1.10 |
0.0972 |
0.0819 |
0.0389 |
0.3890 |
| rs110365063 |
SLC18A2 |
7.68 (2.61) |
0.44 (0.86) |
0.41 (0.57) |
−1.15 |
0.1468 |
0.0998 |
0.0197 |
0.2627 |
| rs110660625 |
TBC1D24 |
2.36 (1.21) |
1.49 (0.69) |
−0.90 (0.67) |
−1.86 |
0.0021 |
0.0086 |
0.4047 |
0.3915 |
| rs110805802 |
TDRKH |
−10.71 (3.00) |
−2.18 (0.92) |
1.66 (0.53) |
4.53 |
<0.0001 |
0.0010 |
0.1826 |
0.3915 |
| rs134282928 |
WBP1 |
3.78 (5.57) |
−1.21 (0.89) |
1.16 (0.58) |
2.03 |
0.0296 |
0.0387 |
0.2062 |
0.3915 |
| rs110883602 | ZP2 | −2.77 (1.10) | 0.94 (0.81) | 2.76 (0.78) | 2.62 | <0.0001 | 0.0010 | 0.3468 | 0.3915 |
aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP.