Table 6.
SNPs associated with net merita
|
SNP |
Gene |
Least-squares means (SEM) |
Linear |
Dominance |
|||||
|---|---|---|---|---|---|---|---|---|---|
| 0 | 1 | 2 | Effect | P value | Q value | P value | Q value | ||
| rs109967779 |
ACAT2 |
178.42 (48.24) |
98.35 (30.35) |
15.01 (31.97) |
−82.07 |
0.0012 |
0.0070 |
0.9660 |
0.8362 |
| rs133700190 |
AP3B1 |
263.47 (82.15) |
105.28 (35.29) |
39.78 (27.83) |
−86.36 |
0.0043 |
0.0134 |
0.3700 |
0.7538 |
| rs110541595 |
ARL6IP1 |
19.00 (47.24) |
102.08 (31.27) |
34.27 (33.92) |
−7.02 |
0.7872 |
0.4223 |
0.0471 |
0.6280 |
| rs110127056 |
ASL |
126.52 (40.99) |
92.90 (30.18) |
15.06 (35.27) |
−58.04 |
0.0190 |
0.0386 |
0.5267 |
0.7538 |
| rs133455683 |
C17H22orf25 |
153.24 (44.49) |
81.81 (32.19) |
33.74 (34.16) |
−58.15 |
0.0227 |
0.0441 |
0.7567 |
0.8181 |
| rs137673698 |
CCT8 |
−66.96 (384.43) |
64.02 (25.15) |
218.87 (70.34) |
154.21 |
0.0254 |
0.0456 |
0.9513 |
0.8362 |
| rs109621328 |
CD14 |
−330.45 (164.59) |
75.08 (51.21) |
92.99 (24.82) |
71.41 |
0.1123 |
0.1167 |
0.0429 |
0.6280 |
| rs133747802 |
CD2 |
25.05 (37.20) |
51.73 (57.91) |
124.90 (31.41) |
50.51 |
0.0178 |
0.0378 |
0.6950 |
0.7831 |
| rs1711496 |
CD40 |
−34.02 (37.54) |
78.45 (30.39) |
177.35 (37.44) |
105.65 |
<0.0001 |
0.0011 |
0.8510 |
0.8362 |
| rs109301586 |
COQ9 |
12.99 (36.38) |
76.86 (32.52) |
180.47 (35.29) |
83.46 |
0.0002 |
0.0016 |
0.5816 |
0.7538 |
| rs133449166 |
CSNK1E |
148.36 (45.78) |
74.03 (31.33) |
5.10 (34.49) |
−71.12 |
0.0057 |
0.0166 |
0.9420 |
0.8362 |
| rs110270752 |
DEPDC7 |
−205.46 (76.20) |
57.40 (35.94) |
89.30 (27.20) |
90.54 |
0.0028 |
0.0104 |
0.0236 |
0.6280 |
| rs43676052 |
EPAS1 |
47.14 (94.81) |
10.96 (33.14) |
121.94 (27.62) |
84.96 |
0.0077 |
0.0211 |
0.1892 |
0.7538 |
| FGF2ag |
FGF2 |
31.03 (49.04) |
118.22 (31.03) |
43.39 (31.60) |
−12.88 |
0.6165 |
0.3509 |
0.0341 |
0.6280 |
| rs109247499 |
FST |
142.59 (37.96) |
75.63 (30.09) |
−3.82 (37.54) |
−73.25 |
0.0023 |
0.0102 |
0.8578 |
0.8362 |
| rs41893756 |
FUT1 |
−54.03 (75.53) |
−39.78 (36.51) |
134.76 (26.92) |
133.31 |
<0.0001 |
0.0011 |
0.1074 |
0.7538 |
| rs109711583 |
HSD17B12 |
168.57 (42.46) |
73.40 (29.38) |
18.20 (35.19) |
−72.89 |
0.0041 |
0.0134 |
0.5686 |
0.7538 |
| rs109769865 |
HSD17B6 |
−17.39 (104.02) |
−12.91 (41.89) |
(25.95) |
92.53 |
0.0091 |
0.0222 |
0.3951 |
0.7538 |
| HSP70C895D |
HSPA1A |
102.78 (62.61) |
107.06 (32.41) |
27.50 (28.95) |
−55.77 |
0.0417 |
0.0671 |
0.3526 |
0.9053 |
| rs110789098 |
IBSP |
75.84 (42.40) |
127.06 (32.00) |
−15.18 (35.38) |
−56.10 |
0.0276 |
0.0460 |
0.0105 |
0.5680 |
| rs111015912 |
LDB3 |
180.77 (83.38) |
129.65 (33.53) |
23.71 (27.55) |
−94.51 |
0.0018 |
0.0093 |
0.5936 |
0.7538 |
| rs41256848 |
LHCGR |
144.34 (44.56) |
66.31 (29.33) |
37.07 (34.33) |
−49.65 |
0.0452 |
0.0703 |
0.5546 |
0.9408 |
| rs41859871 |
MON1B |
459.24 (163.85) |
148.99 (40.47) |
43.67 (25.54) |
−125.76 |
0.0010 |
0.0067 |
0.2594 |
0.7538 |
| rs43703916 |
MRPL48 |
13.22 (41.27) |
88.01 (30.70) |
118.26 (40.09) |
52.03 |
0.0488 |
0.0735 |
0.461 |
0.9408 |
| rs109761676 |
MS4A8B |
−72.05 (71.38) |
50.4 (33.00) |
112.45 (30.27) |
77.88 |
0.0095 |
0.0222 |
0.5108 |
0.7538 |
| rs133762601 |
NEU3 |
−23.09 (49.33) |
−94.09 (75.68) |
83.89 (26.51) |
61.77 |
0.0115 |
0.0256 |
0.1105 |
0.7538 |
| rs134264563 |
OCLN |
147.95 (65.06) |
84.23 (31.17) |
21.84 (29.23) |
−62.76 |
0.024 |
0.0448 |
0.9878 |
0.8362 |
| rs111027720 |
PARM1 |
209.58 (41.04) |
73.79 (30.13) |
−18.2 (35.56) |
−111.8 |
<0.0001 |
0.0011 |
0.5531 |
0.7538 |
| rs109813896 |
PCCB |
177.33 (50.88) |
99.87 (30.79) |
21.02 (30.85) |
−78.35 |
0.0024 |
0.0102 |
0.9856 |
0.8362 |
| rs109629628 |
PMM2 |
290.06 (49.07) |
103.79 (29.91) |
−34.46 (32.43) |
−156.4 |
<0.0001 |
0.0011 |
0.5195 |
0.7538 |
| rs133729105 |
RABEP2 |
−8.85 (46.79) |
48.97 (30.72) |
117.46 (31.97) |
64.29 |
0.0088 |
0.0222 |
0.8863 |
0.8362 |
| rs110365063 |
SLC18A2 |
−63.33 (115.05) |
160.24 (38.53) |
50.69 (26.17) |
−57.22 |
0.0998 |
0.1136 |
0.0142 |
0.568 |
| rs110660625 |
TBC1D24 |
178.3 (52.52) |
71.03 (31.02) |
12.25 (29.81) |
−75.7 |
0.0029 |
0.0104 |
0.528 |
0.7538 |
| rs110805802 | TDRKH | −280.61 (126.98) | −25.67 (41.26) | 95.88 (25.52) | 141.8 | 0.0002 | 0.0016 | 0.3684 | 0.7538 |
aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP. For entries not beginning with rs, the abbreviation given by previous researchers was used.