Table 7.
SNPs associated with milk yielda
|
SNP |
Gene |
Least-squares means (SEM) |
Linear |
Dominance |
|||||
|---|---|---|---|---|---|---|---|---|---|
| 0 | 1 | 2 | Effect | P value | Q value | P value | Q value | ||
| rs110127056 |
ASL |
129.19 (93.50) |
76.85 (65.52) |
−110.46 (78.95) |
−125.97 |
0.0325 |
0.1316 |
0.4235 |
0.6041 |
| rs43114141 |
AVP |
−219.62 (96.69) |
28.79 (76.21) |
119.38 (80.43) |
163.02 |
0.0070 |
0.0655 |
0.4035 |
0.6041 |
| rs109032590 |
BOLA-DMB |
−196.31 (132.92) |
−48.42 (72.66) |
84.09 (63.57) |
137.68 |
0.0348 |
0.1316 |
0.9396 |
0.6799 |
| rs135744058 |
CACNA1D |
−91.04 (169.91) |
−118.53 (71.28) |
125.13 (61.36) |
177.10 |
0.0103 |
0.0785 |
0.2251 |
0.5234 |
| rs137601357 |
CAST |
194.98 (100.40) |
50.25 (63.19) |
−101.42 (76.03) |
−148.69 |
0.0150 |
0.0922 |
0.9681 |
0.6799 |
| rs109621328 |
CD14 |
−1561.65 (401.52) |
−111.12 (117.92) |
87.57 (47.23) |
365.61 |
0.0010 |
0.0165 |
0.0071 |
0.4733 |
| rs134432442 |
CPSF1 |
−415.14 (178.65) |
−181.24 (75.87) |
170.79 (59.25) |
323.52 |
<0.0001 |
0.0059 |
0.6155 |
0.6557 |
| rs110270752 |
DEPDC7 |
166.55 (183.04) |
144.62 (81.13) |
−83.06 (57.35) |
−175.37 |
0.0171 |
0.0933 |
0.0498 |
0.5180 |
| rs109503725 |
DSC2 |
137.43 (81.39) |
−34.35 (61.57) |
126.23 (80.26) |
−4.14 |
0.9427 |
0.6564 |
0.0498 |
0.5180 |
| rs42075611 |
DTX2 |
419.42 |
268.38 |
−5.14 |
−235.63 |
0.0292 |
0.1274 |
0.7702 |
0.6642 |
| |
|
(264.53) |
(162.59) |
(53.42) |
|
|
|
|
|
| rs133175991 |
DZIP3 |
−468.80 (238.09) |
−87.50 (84.96) |
114.47 (60.92) |
236.29 |
0.0041 |
0.0537 |
0.5411 |
0.6557 |
| rs135071345 |
FAM5C |
91.43 (282.11) |
273.07 (82.89) |
−85.79 (54.42) |
−281.47 |
0.0007 |
0.0153 |
0.0993 |
0.5234 |
| rs42339105 |
GOLGA4 |
1083.08 (686.77) |
−215.11 (108.30) |
19.03 (53.55) |
159.55 |
0.1543 |
0.3156 |
0.0341 |
0.5180 |
| rs110828053 |
HSD17B7 |
−131.10 (2096.70) |
−142.60 (79.17) |
93.43 (55.37) |
183.95 |
0.0155 |
0.0922 |
0.3517 |
0.6041 |
| rs110789098 |
IBSP |
−33.11 (96.27) |
134.44 (70.23) |
−68.21 (78.36) |
−36.41 |
0.5439 |
0.5221 |
0.0406 |
0.5180 |
| rs134011564 |
MARVELD1 |
1364.97 (686.88) |
26.81 (52.94) |
117.22 (122.41) |
34.81 |
0.7874 |
0.6199 |
0.0432 |
0.5180 |
| rs109761676 |
MS4A8B |
20.93 (168.91) |
161.86 (71.07) |
−101.57 (63.97) |
−159.13 |
0.0260 |
0.1216 |
0.0703 |
0.5180 |
| rs109383758 |
NLRP9 |
−125.31 (86.14) |
4.68 (64.67) |
171.33 (84.75) |
148.48 |
0.0108 |
0.0785 |
0.8290 |
0.6642 |
| rs111027720 |
PARM1 |
−119.34 (90.81) |
−35.61 (63.47) |
272.73 (77.68) |
204.66 |
0.0005 |
0.0153 |
0.1875 |
0.5234 |
| rs109506766 |
PGR |
−180.89 (117.82) |
−39.99 (66.65) |
150.10 (69.77) |
172.17 |
0.0059 |
0.0644 |
0.7877 |
0.6642 |
| rs110805802 |
TDRKH |
77.83 (317.74) |
142.85 (96.21) |
−96.03 (53.67) |
−194.34 |
0.0362 |
0.1316 |
0.4145 |
0.6041 |
| rs132789482 |
TSHB |
399.97 (280.14) |
219.67 (102.03) |
0.15 (56.95) |
−211.99 |
0.0240 |
0.1208 |
0.9107 |
0.6799 |
| rs134031231 |
TXN2 |
−37.85 (102.08) |
122.46 (63.64) |
−76.26 (77.60) |
−44.81 |
0.4682 |
0.4715 |
0.0420 |
0.5180 |
| rs134031231 | TXN2 | −37.85 (102.08) | 122.46 (63.64) | −76.26 (77.60) | −44.81 | 0.4682 | 0.4715 | 0.0420 | 0.5180 |
aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP.