Table 1. Proteins number (PN) in the top 10 communities of three methods sorted by GO enrichment values ranked p-values of all modules for biological process, molecular functions and cellular component.

ELC Method						LC Method						CPM Method
BiologicalProcess		MolecularFunctions		CellularComponent		BiologicalProcess		MolecularFunctions		CellularComponent		BiologicalProcess		MolecularFunctions		CellularComponent
PN	p-value	PN	p-value	PN	p-value	PN	p-value	PN	p-value	PN	p-value	PN	p-value	PN	p-value	PN	p-value
179	5.30E-15	26	7.43E-13	179	2.96E-38 *	7	1.85E-17 *	4	1.71E-14 *	44	5.11E-23	5	2.02E-13	4	2.16E-10	4	1.14E-12
35	6.14E-15	179	3.07E-10	20	2.50E-20	5	2.02E-13	6	1.19E-11	4	1.63E-14	69	3.07E-10	5	2.34E-09	7	9.23E-12
20	1.79E-15	9	5.90E-10	65	2.22E-15	4	2.21E-11	4	2.16E-10	4	8.13E-14	3	5.02E-10	3	7.48E-09	3	2.52E-11
65	6.64E-14	35	6.15E-10	26	6.27E-14	44	1.95E-10	4	4.27E-09	20	5.23E-13	5	5.01E-09	3	5.76E-08	3	2.52E-10
25	1.31E-13	45	7.68E-10	31	2.10E-13	6	4.28E-10	3	5.76E-09	4	1.14E-12	3	5.52E-09	5	9.60E-07	5	2.52E-10
96	3.76E-13	65	1.67E-09	31	1.25E-12	3	5.02E-10	3	7.48E-09	6	1.87E-12	4	9.13E-09	7	1.12E-06	4	4.03E-10
26	4.64E-13	156	1.80E-09	98	2.61E-12	3	5.02E-10	44	1.64E-08	4	3.42E-12	5	3.27E-08	3	2.40E-06	5	4.46E-10
26	6.93E-13	18	5.78E-09	20	3.87E-12	4	7.50E-10	3	1.60E-07	6	5.17E-12	4	4.13E-08	4	3.20E-06	5	1.21E-09
373	4.13E-12	17	6.74E-09	156	5.82E-12	8	1.52E-09	3	1.60E-07	7	9.23E-12	3	7.34E-08	3	4.48E-06	3	3.02E-09
73	6.31E-12	8	5.12E-08	36	4.07E-11	37	4.03E-09	8	2.48E-07	3	2.52E-11	7	7.36E-08	4	5.93E-06	4	1.13E-07

^*the bold data marked with an asterisk (*) is the best value of each GO enrichment category.