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. 2013 Jun 20;9(6):e1003565. doi: 10.1371/journal.pgen.1003565

Table 4. Operons associated with a FNR ChIP-seq peak and lacking a FNR-dependent change in expression in GMM but are repressed by Fur (Category 4).

Peak Center (nt)a First Gene of Operon Downstreamb B-number of First Genec Cellular Functiond Referencee
611865 fes b0585 Enterochelin Esterase [151], [152]
621417 fepD/entS b0590/b0591 Ferric Enterobactin Transporter (fepD)/Enterobactin Efflux Transporter (entS) [152][154]
623975 fepB/entC b0592/b0593 Ferric Enterobactin Transporter (fepB)/Isochorismate Synthase (entC) [152], [155], [156]
1298775 oppA b1243 Oligopeptide Transporter [152]
1308975 tonB b1252 Iron-Siderophore Transport [152], [157]
1634625 nohA b1548 Predicted Packaging Protein (Qin Prophage) [152], [158]
1735575 purR b1658 Hypoxanthine Transcriptional Repressor [159], [160]
3150150 exbB b3006 Iron-Siderophore Transport [152]
3273150 garP b3127 Galactarate/Glucarate/Glycerate Transporter [152], [160]
3538050 feoA b3408 Ferrous Iron Transport [59]
a

Genomic location within each FNR ChIP-seq peak with the highest read count (the summit of the peak).

b

First gene of the operon downstream of the FNR ChIP-seq peak, and operon designation was obtained from EcoCyc [70]. For peaks located within divergent promoters with both operons repressed by Fur, both genes are identified, separated by “/”.

c

Identification number (B-number) for the first gene in each operon, obtained from EcoCyc [70]. For peaks located within divergent promoters with both operons repressed by Fur, both B-numbers are identified, separated by “/”.

d

Functional description of the products of the operons, obtained from EcoCyc [70]. For peaks located within divergent promoters with operons repressed by Fur, the functions of both operons are listed, separated by “/”.

e

Reference for Fur repression of each operon.