Table 2. Family-nested QTL for RPR in RIL families.

Chr	Mb	cM	RPR (RMIP)	DTA (RMIP)	EHT (RMIP)	Local annotations of interest
1	15.7	31.7	31	59	10
1	22.3	39.2	34	22	26
1	34.4	54	22	5	0
1	251.1	146.6	28	9	66
1	260.3	156.5	27	15	4
1	281.8	176.9	26	15	15
1	285.9	180.9	20	61	13
2	27.8	58.8	29	3	47
2	31.4	62.2	35	13	6
2	161.8	82.5	24	25	14	Cellulose Synthase-9 (GRMZM2G018241)
2	192.6	103.7	31	21	14
2	233.1	155.7	36	15	13
3	5.2	20.1	37	11	15
3	28.0	53.4	20	65	37
3	178.2	90.0	35	6	62
4	241.7	126.9	28	5	13
5	5.9	22.1	18	0	0
5	75.2	66.8	25	54	57
5	175.5	87.2	23	3	1
5	211.9	138.0	18	8	8
7	6.0	26.3	18	18	0
7	159.4	105.2	61	2	3
7	170.0	135.0	44	78	7
8	163.1	94.1	53	45	11
8	164.8	100.3	40	15	4
9	4.0	0.0	23	2	2
9	16.2	28.5	38	3	6
9	25.7	42.8	20	31	32
9	140.9	85.6	17	24	7
9	148.7	107.6	19	0	1
9	150.1	114.8	19	3	1
10	77.5	38.6	31	34	64	Predicted cellulose synthase activity by homology (GRMZM2G157729, GRMZM2G110145)
10	139.6	69.2	19	6	5	Putative 4-coumarate-CoA ligase-like gene (AF466202.2_FG012)

The reported resample model inclusion probabilities (RMIP) of this table detail the number of models one or more markers located within three cM of the noted association was selected out of 100 models. Each of these models was constructed from family-stratified sampling of the RILs with replacement. Physical positions are stated with respect to reference genome AGPv1.