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. 2013 Jun 18;8(6):e65390. doi: 10.1371/journal.pone.0065390

Table 2. Summary benchmark of LINNAEUS and SPECIES.

Corpus Level Software Precision Recall F1
S800 Document LINNAEUS 86.4% 89.3% 87.9%
SPECIES 85.9% 89.8% 87.8%
Mention LINNAEUS 84.3% 75.4% 79.6%
SPECIES 83.9% 72.6% 77.8%
L100E Document LINNAEUS 89.2% 91.4% 90.3%
SPECIES 89.9% 94.3% 92.0%
Mention LINNAEUS 88.7% 81.8% 85.1%
SPECIES 91.5% 90.8% 91.1%

We compared LINNAEUS and SPECIES taggers by calculating their precision and recall on two different corpora (L100E an S800) at the document and at the mention level.

Unsurprisingly, SPECIES performs better than LINNAEUS on the L100E corpus, which we used during the development SPECIES. On the S800 corpus, which did not exist when either tagger was developed, we obtain very similar performance numbers for the two taggers.

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