Table 1. Summary of run statistics and assembly.
Run statistics | |
Total number of reads | 1,012,155 |
Number of aligned reads | 482,790 |
Average aligned read length | 421 nucleotides |
Total number of aligned bases | 147,882,767 |
454-Newbler Assembly | |
Number of full assembled reads | 414,125 |
Number of partial assembled reads | 68,529 |
Number of Singletons | 126,383 |
Number of Repeats | 363,905 |
Number of Outliers | 11,980 |
Number of Too short reads | 27,233 |
Large contigs (>500 bp) | |
Number of contigs | 8,630 |
Number of bases | 8,675,718 |
Average contig size | 1,005 |
N50* Contig Size | 1,087 |
Largest contig size | 6,318 |
All contigs (>100 bp) | |
Number of contigs | 14,204 |
Number of bases | 10,240,327 |
size above which 50% of the assembled sequences can be found.