Table 3.
Phylogenetic relationships of Pseudomonas sp. with frame work organisms supported by unique motifs
| Motif | Frequency of signature | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleotide sequence | Unique no. | Size (nts) | Pseudomonas spp. | Pseudomonas sp.a | ||||||||
| PAE (375) | PST (199) | PFL (273) | PPT (414) | PSY (89) | PAE (219) | PST (197) | PFL (463) | PPT (347) | PSY (141) | |||
| P. aeruginosa | ||||||||||||
| GCTAATACCGCATACGTCCTGAGGGAGAAA | M15 | 30 | 355 | 0 | 0 | 1 | 0 | 80 | 1 | 0 | 0 | 0 |
| ATCAGATGAGCCTAGGTCGGATTAGCTAGTTGGTGGGGTAAAGGCCTACC | M9 | 50 | 341 | 1 | 0 | 1 | 0 | 119 | 5 | 0 | 0 | 0 |
| AAACGGGCGCTAATACCGCATACGTCCTGAGGGAGAAAGTGGGGGATCTT | M12 | 50 | 347 | 0 | 0 | 1 | 0 | 79 | 1 | 0 | 0 | 0 |
| TGGCCTTGACATGCTGAGAACTTTCCAGAGATGGATTGGTGCCTTCGGGA | M15 | 50 | 352 | 1 | 0 | 2 | 0 | 121 | 13 | 0 | 1 | 0 |
| P. stutzeri | ||||||||||||
| TAACGCATTAAGTCGACCGCCTGGGGAGTA | M12 | 30 | 3 | 190 | 0 | 6 | 0 | 8 | 171 | 0 | 0 | 0 |
| TTTTGACGTTACCGACAGAATAAGCACCGGCTAACTTCGT | M11 | 40 | 1 | 134 | 0 | 2 | 0 | 16 | 138 | 0 | 0 | 0 |
| TATGGCAGAGGGTGGTGGAATTTCCTGTGTAGCGGTGAAA | M12 | 40 | 0 | 185 | 1 | 6 | 0 | 4 | 165 | 0 | 0 | 0 |
| TGTTTTGACGTTACCGACAGAATAAGCACCGGCTAACTTCGTGCCAGCAG | M9 | 50 | 1 | 133 | 0 | 2 | 0 | 11 | 134 | 0 | 0 | 0 |
| P. putida | ||||||||||||
| AACCTGGGAACTGCATCCAAAACTGGCAAGCTAGAGTACG | M15 | 40 | 0 | 0 | 2 | 194 | 0 | 0 | 0 | 0 | 182 | 0 |
| P. syringae | ||||||||||||
| TAAAGCGCGCGTAGGTGGTTTGTTAAGTTGAATGTGAAAT | M12 | 40 | 0 | 0 | 3 | 3 | 68 | 0 | 0 | 14 | 0 | 23 |
| P. fluorescens | No motif could be designated as unique | |||||||||||
aIsolates designated as Pseudomonas sp. on the basis of FWS (Supplementary Table 3)
PAE: Pseudomonas aeruginosa; PFL: P. fluorescens; PPT: P. putida; PST: P. stutzeri; PSY: P. syringae