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. Author manuscript; available in PMC: 2013 Jun 21.
Published in final edited form as: J Mol Biol. 2007 Sep 29;374(3):806–816. doi: 10.1016/j.jmb.2007.09.069

Table 2.

Selected characteristics of the starting structures. The each structural characteristic is compared to the native state in order to determine whether the starting configuration is nativelike. A configuration is nativelike if it compares to the native state within one standard deviation of each metric in the native state simulations (see Table 1). The symbol “√” is used to indicate the presence of the structural characteristic in the starting structure; the symbol “-” indicates that it is not. a C-α root mean-square deviation from the energy-minimized native structure. b Number of native contacts. Two residues were considered to be in contact if their α-carbons lay within 7 Å; two nearest neighbors along the chain were excluded. The reference native configuration was the energy-minimized crystallographic structure (see text). c Distances between ring centroids.

Starting structure C-α rmsda N.N.C.b C-α rmsd helix1a C-α rmsd helix2a C-α rmsd helix3a F6-F10 distancec F6-F17 distancec F10-F17 distancec
0 - - - - -
1 - - - - - -
2 - - - - - - -
3 - - - - - - -
4 - - - - -
5 - - - - - - - -
6 - - - - - - - -
7 - - - - -
8 - - - - -