Skip to main content
. 2013 Jun 21;8(6):e66642. doi: 10.1371/journal.pone.0066642

Table 1. Bacterial strains and plasmids.

Strain or plasmid (synonym) Relevant characteristic(s) Source or reference
Agrobacterium tumefaciens
A. tumefaciens NT1 NT1 derivative of strain C58, carrying pZLR4; Biosensor usedfor NAHSL detection; GmR [38]
Escherichia coli
S17-1 recA pro hsdR RP4-2-Tc::Mu-Km::Tn7 [49]
DH5α Host for cloning; SupE44 ΔlacU169 (Φ80lacZΔM15) hsdR17recA1 endA1 gyrA96 thi-1 relA1 Lab collection
DH5α(pUC19) (Ec) Strain DH5α carrying pUC19; ApR This study
DH5α(pUC19-qsdA) (Ec-qsdA) QsdA-expressing DH5α; ApR This study
Pectobacterium atrosepticum
CFBP 6276 Potato soft-rot pathogen; NAHSL producer [25]
6276(pME6000) (Pa-QS+) Strain 6276 carrying pME6000, a broad-host-range cloningvector; TcR [40]
6276(pME6000-aiiA) (Pa-QS) Strain 6276 carrying pME6000 containing the aiiA genefrom Bacillus sp. A24 under the constitutive Plac promoter; TcR [40]
Rhodococcus erythropolis
R138 (BCA) NAHSL-degrading isolate obtained from hydroponic cultureof potato plants [50]
R138(pEPR1-qsdA::gfp) (BCA-qsdA::gfp) R138 transformed with pEPR1 qsdA-gfp This study
R138 ΔqsdA (BCA-ΔqsdA) R138 with a 813 bp fragment deleted from the qsdA gene This study
Plasmids
pZLR4 traG::lacZ/traR reporter system [38]
pME6000 Broad-host-range cloning vector, TcR [51]
pME6000-aiiA (pME6863) pME6000 carrying the aiiA gene from Bacillus sp. A24 underthe constitutive Plac promoter [52]
pAKE604 Conjugative suicide vector for qsdA gene deletion; KmR [26]
pAKE604 ΔqsdA pAKE604 containing the qsdA upstream and downstreamregions; KmR This study
pEPR1 Shuttle promoter-probe vector carrying the promoterlessgfpuv reporter gene; KmR [28]
pEPR1-qsdA::gfp pEPR1 with a qsdA::gfp uv transcriptional fusion; KmR This study
pUC19 Cloning vector for E. coli; ApR Lab. collection
pUC19-qsdA pUC19 with a 1376 bp PCR fragment containing the qsdAgene; ApR This study

KmR, ApR, GmR and TcR indicate resistance to kanamycin, ampicillin, gentamicin and tetracycline, respectively. NAHSL, N-acyl homoserine lactone; CFBP, Collection Française de Bactéries associées aux Plantes, Institut National de la Recherche Agronomique (INRA), Angers, France.