Table 1. Forward and reverse primers used for the qRT-PCR of ADAM10, BACE1, PSEN2, PS2V and MAPT transcripts.
Gene | Forward Primer | Reverse Primer |
RPS16 | 5′-AGACAGCTACAGCCGTGGCACAT-3′ | 5′-CAGAAGCAGAACAGGCTCCAGTAACTT-3′ |
ADAM10 | 5′-GTGATCGCCCAGATATCCAGT-3′ | 5′-GAACCCCATCATCAAAGTCTCG-3′ |
BACE1 | 5′-GAGATCGCCAGGCTCTGTG-3′ | 5′-CCACGATGCTCTTGTCATAGTTG-3′ |
PS2V (RT-PCR) | 5′-ACGGTCAGCTTCATCCAG-3′ (in Psen2 exon 3) | 5′-TCAGGAAGAGCGTGGGGTAA-3′ (in Psen2 exon 7) |
PSEN2 (qPCR) | 5′-CCGCTGCTACAAGTTCATCCA-3′ | 5′-CCACGTTGTAGGTCTTGAGCACT-3′ |
PS2V (qPCR) | 5′-GCTTTCATCCACGGCTG-3′ (spans Psen2 exon 4/6 junction) | 5′-CCGAGGTAGATGTAGGTGAAC-3′ (in Psen2 exon 6) |
MAPT (RT-PCR for 3R and 4R) | (5′-ACTCCACCCAAATCACCCTCCTC-3′) | (5′-TTGATGCTGCCAGTGGAAGAGAC-3′) |
MAPT (RT-PCR for 0N, 1N and 2N) | (5′- TTCTCCTCCACTGTCCTCTTCTG-3′) | (5′- GTGTCTCCAATGCCTGCTTCTTC-3′) |
MAPT (qPCR for full length) | 5′-TCCACCGAGAACCTGAAGCA-3′ | 5′-GATGTTGCCTAGCGAGCGG-3′ |
MAPT (qPCR for 3R) | 5′-GGAAGGTGCAAATAGTCTACAAACC-3′ | 5′-CGCTCGCTAGGCAACATCTC-3′ |
MAPT (qPCR for 4R) | 5′-TAGCAACGTCCAGTCCAAGTGT-3′ | 5′-CGCTCGCTAGGCAACATCTC-3′ |
Note that guinea pig exon designations are according to the cognate exons in human since annotation of the guinea pig genome sequence is currently rudimentary.