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. 2013 Jun 21;8(6):e69255. doi: 10.1371/journal.pone.0069255

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© 2013 Li et al

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

PMC Copyright notice

Phylogenetic relationships of PVH and viruses in the genus Carlavirus within the family Betaflexiviridae based on the protein-coding sequences of (A) the replication polyprotein and (B) the coat protein. The neighbor-joining trees were constructed with maximum composite likelihood substitution model using MEGA (version 4.1). Bootstrap values shown at the branching points indicate the percentages of 10000 replications produced the clade (bootstrap values shown when >75%). Virus species and GenBank accession numbers used in the analysis: Aconitum latent virus (AcLV, AB051848); Apple stem pitting virus (ASPV, D21829); Blueberry scorch virus (BlScV, L25658); Carnation latent virus (CLV, AJ010697); Cowpea mild mottle virus (CPMMV, AF024628); Chrysanthemum virus B (CVB, AB245142); Coleus vein necrosis virus (CVNV, EF527260); Carrot carlavirus (CVS, EU881919); Daphne virus S (DVS, AJ620300); Garlic common latent virus (GarCLV, AB004566); Helleborus mosaic virus (HeMV, FJ196838); Helleborus net necrosis virus-1 (HeNNV-1, FJ196835); Helleborus net necrosis virus-2 (HeNNV-2, FJ196836); Hop latent virus (HpLV, AB032469); Helenium virus S (HelVS, D10454); Hydrangea chlorotic mottle virus (HCMV, DQ412999); Kalanchoe latent virus (KLV, AJ293570); Ligustrum necrotic ringspot virus (LiNRSV, EU074853); Lily symptomless virus (LSV, AJ564638); Melon yellowing-associated virus (MYaV, AY373028); Narcissus common latent virus (NCLV, AM158439); Nerine latent virus (NeLV, DQ098905); Pea streak virus (PeSV, AF354652); Phlox virus B (PhVB, EU162589); Phlox virus M (PhVM, EF507476); Phlox virus S (PhVS, EF492068); Passiflora latent virus (PLV, DQ455582); Poplar mosaic virus (PopMV, AY505475); Potato latent virus (PoLV, EU433397); Potato virus M (PVM, AJ437481); Potato rough dwarf virus or Potato virus P (PRDV or PVP, EU020009); Potato virus S (PVS, AJ863509); Shallot latent virus (SLV, AJ292226); Sweet potato chlorotic fleck virus (SPCFV, AY461421).