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. 2013 Jun 21;8(6):e69255. doi: 10.1371/journal.pone.0069255

Table 1. Polymerase chain reaction primers used for the amplification and sequencing of the PVH genome.

Primer name Sequence (5' to 3') Nucleotide position Polarity Method
PoleR5 CYCAKYTCCATSWYYC Antisense Reverse transcription
PL001F ACAAAAGAATACCAGGAGGAATTGC Sense
PLN1674R GACTTGTGGAGGCTTGTGAAAG Antisense
Carla114F ATGGCWYTNACWTAYAGRASKCC 092-114nt Sense Degenerate PCR
Carla900F GGACGATGGGCAGGTGTAC 855-873nt Sense
Car1340F GTGGCGCTTGATAGGAAATC 1468-1487nt Sense
Carla1763F GCCCGTTACAGTCGCGCCAG 1756-1775nt Sense
Carla3357R GCTAATTTCGTAGACCAGAGAG 3336-3357nt Antisense Specific primer
Carla3226F CTCGAGTACCTAGAGAGGAAGAG 3226-3248nt Sense Specific primer
Carla3600R GTAGTTCGATGCCTCATGC 4839-4857nt Antisense
Carla4211R CTATTCTCGAATTTTGGGTTG 3954-3974nt Antisense
Carla4610F CAAGGTGGGTGCACAAAATC 4604-4623nt Sense
Carla5040R CTATATCCACTAACCAATCCCTGC 5006-5029nt Antisense
Carla5468F CCATGGCCAATATGCTTTTCAC 5468-5489nt Sense Specific primer
Carla5672R CCATCAGCGCATAAGTTCCACC 5651-5672nt Antisense Specific primer
Carla5800F CAGATTACACTTGCAACAGAAG 5029-5050nt Sense
Carla6670F GGCTGACGACAAGAAGGG 7170-7187nt Sense
HC511-18TR GG A T A T CTGCAG G A T C CAAGC(T)18 PolyA Antisense Reverse transcription
HC511R GG A T A T CTGCAG G A T C CAAGC Antisense Anchored primer

a The underlined sequences are the restriction sites specific for EcoRV (GAT↓ ATC) and BamHI (G↓ GATCC). Protection bases are included in the 5' termini.