Table 2. Sequence identity comparison of PVH-Ho and other carlaviruses.
PVH-YN |
Other carlaviruses |
|||
---|---|---|---|---|
nt (%) | aa (%) | nt (%) | aa (%) | |
Full length | 93.4 | 42.4-54.0 | ||
5' UTR | 94.3 | 46.5-61.3 | ||
ORF1 (RdRp) | 93.1 | 95.8 | 49.8-54.0 | 19.1-47.3 |
ORF2 (TGB1) | 94.5 | 97.4 | 43.0-60.8 | 32.3-62.2 |
ORF3 (TGB2) | 93.6 | 96.3 | 47.9-56.9 | 38.0-53.7 |
ORF4 (TGB3) | 94.6 | 94.0 | 40.4-48.8 | 20.0-42.0 |
ORF5 (CP) | 95.3 | 98.6 | 31.1-54.0 | 17.9-56.9 |
ORF6 (CRP) | 94.2 | 93.8 | 29.3-43.5 | 15.4-37.6 |
3' UTR | 100 | 58.75-66.2 |
Note: PVH-Ho, Potato virus H from Hohhot in Inner Mongolia; PVH-YN, Potato virus H from Yunnan province.