Table 1. Characteristics of the 88 VNTR loci.
| VNTR ID | In ORF | ML$(bp) | CO92 Position | Alleles | DI | Reference |
| yp0120ms01 | Overlap | 18 | 120612.120755 | 5 | 0.41 | [17] |
| yp0559ms15 | No | 15 | 559948.559977 | 2 | 0.12 | [17] |
| yp0581ms40 | No | 17 | 581354.581472 | 4 | 0.54 | [17] |
| yp0718ms41# | No | 17 | 718786.718904 | 3 | 0.53 | [17] |
| yp1018ms44 | No | 17 | 1018653.1018737 | 3 | 0.08 | [17] |
| yp1118ms69 | No | 16 | 1118998.1119093 | 4 | 0.49 | [17] |
| yp1335ms46 | No | 7 | 1335252.1335286 | 15 | 0.87 | [17] |
| yp1580ms70 | Yes | 9 | 1580109.1580153 | 11 | 0.82 | [17] |
| yp1895ms21 | Yes | 18 | 1895349.1895510 | 3 | 0.08 | [17] |
| yp1925ms71 | No | 14 | 1925713.1925782 | 4 | 0.33 | [17] |
| yp2058ms51 | Yes | 21 | 2058747.2058788 | 3 | 0.18 | [17] |
| yp2769ms06 | Overlap | 60∼ | 2769354.2769833 | 16 | 0.85 | [17] |
| yp3057ms09# | Yes | 18 | 3058032.3058625 | 16 | 0.73 | [17] |
| yp3060ms56# | Overlap | 16 | 3060574.3060653 | 6 | 0.73 | [17] |
| yp3236ms73# | Yes | 18 | 3236823.3236912 | 4 | 0.52 | [17] |
| yp3245ms74 | Yes | 15 | 3245601.3245690 | 4 | 0.52 | [17] |
| yp4042ms35 | Yes | 15 | 4042417.4042491 | 4 | 0.56 | [17] |
| yp4425ms38# | No | 16 | 4425343.4425470 | 7 | 0.68 | [17] |
| M02 | No | 1 | 3122635.3122644 | 5 | 0.36 | [18] |
| M06 | No | 2 | 462711.462722 | 7 | 0.66 | [18] |
| M09 | Yes | 3 | 2871853.2871870 | 7 | 0.22 | [18] |
| M12c | No | 4 | 2325280.2325319 | 14 | 0.88 | [18] |
| M15# | No | 5 | 3696792.3696816 | 7 | 0.61 | [18] |
| M18 | No | 6 | 2771484.2771519 | 12 | 0.86 | [18] |
| M21# | No | 7 | 427497.427531 | 7 | 0.74 | [18] |
| M22* | No | 7 | 1343780.1343870 | 23 | 0.93 | [18] |
| M23* | No | 7 | 3458682.3458730 | 16 | 0.89 | [18] |
| M25* | No | 7 | 2984639.2984792 | 21 | 0.93 | [18] |
| M26 | No | 8 | 3358733.3358748 | 2 | 0.18 | [18] |
| M27 | No | 8 | 3081535.3081686 | 26 | 0.94 | [18] |
| M28* | Overlap | 8 | 1553973.1554028 | 13 | 0.89 | [18] |
| M29* | No | 8 | 2238495.2238558 | 11 | 0.8 | [18] |
| M31 | No | 8 | 2315966.2316029 | 12 | 0.88 | [18] |
| M33* | Yes | 9 | 845399.845632 | 15 | 0.85 | [18] |
| M36 | No | 10 | 2878786.2878805 | 7 | 0.54 | [18] |
| M41 | Yes | 12 | 1896606.1896629 | 2 | 0.02 | [18] |
| M43* | No | 12 | 174513.174572 | 9 | 0.78 | [18] |
| M49 | No | 14 | 3158808.3158849 | 4 | 0.39 | [18] |
| M52 | Yes | 15 | 1198069.1198113 | 2 | 0.18 | [18] |
| M54 | No | 16 | 932708.932755 | 8 | 0.82 | [18] |
| M55 | No | 16 | 1868893.1868924 | 4 | 0.27 | [18] |
| M56 | Overlap | 17 | 2640246.2640279 | 5 | 0.26 | [18] |
| M61# | No | 18 | 2552583.2552672 | 7 | 0.6 | [18] |
| M65 | Overlap | 19 | 2999986.3000042 | 4 | 0.14 | [18] |
| M66 | No | 20 | 3555712.3555791 | 4 | 0.36 | [18] |
| M68 | No | 20 | 150777.150816 | 7 | 0.27 | [18] |
| M69 | Yes | 21 | 772786.772827 | 1 | 0 | [18] |
| M71 | Overlap | 21 | 3768639.3768680 | 4 | 0.12 | [18] |
| M73 | Yes | 30 | 2748784.2748843 | 3 | 0.13 | [18] |
| M74 | Yes | 36 | 3114610.3114681 | 3 | 0.17 | [18] |
| M76 | Overlap | 41 | 4366037.4366118 | 2 | 0.27 | [18] |
| M77 | Overlap | 45 | 54675.54899 | 4 | 0.23 | [18] |
| M79 | No | 8 | 3832848.3832927 | 14 | 0.88 | [18] |
| M37(ms07) | No | 10 | 2916163.2916232 | 7 | 0.56 | [17] & [18] |
| M72(ms54) | No | 22 | 2612799.2612842 | 3 | 0.51 | [17] & [18] |
| M59(ms05) | Overlap | 17 | 1935787.1935939 | 7 | 0.47 | [17] & [18] |
| M58(ms04) # | No | 17 | 1290131.1290266 | 8 | 0.71 | [17] & [18] |
| M51(ms20) | Yes | 15 | 1814480.1814524 | 4 | 0.51 | [17] & [18] |
| M42(ms45) | No | 12 | 1108967.1109002 | 4 | 0.18 | [17] & [18] |
| M34(ms62)* | Yes | 9 | 4280839.4280892 | 22 | 0.93 | [17] & [18] |
| M19 | No | 6 | 809405.809578 | 28 | 0.89 | [24] |
| M24 | No | 7 | 808089.808130 | 6 | 0.69 | [24] |
| M70 | Yes | 21 | 3793499.3793540 | 2 | 0.02 | [24] |
| M75 | Yes | 18 | 802532.802675 | 7 | 0.62 | [24] |
| N0171 | Overlap | 18 | 172086.172157 | 5 | 0.38 | This study |
| N0320 | Overlap | 8 | 3208218.3208273 | 12 | 0.81 | This study |
| N0322 | No | 7 | 322213.322254 | 12 | 0.86 | This study |
| N0335 | No | 18 | 335291.335362 | 6 | 0.39 | This study |
| N0865# | No | 18 | 865723.865758 | 5 | 0.63 | This study |
| N1093 | Yes | 18 | 1093917.1093970 | 3 | 0.1 | This study |
| N1398 | Overlap | 17 | 1398764.1398814 | 4 | 0.25 | This study |
| N1606* | No | 9 | 1607058.1607093 | 7 | 0.81 | This study |
| N1736 | Yes | 27 | 1736544.1736570 | 2 | 0.39 | This study |
| N2117* | Yes | 9 | 2117885.2117911 | 12 | 0.86 | This study |
| N2486# | No | 17 | 2486193.2486243 | 3 | 0.56 | This study |
| N2577* | No | 7 | 2577991.2578039 | 14 | 0.85 | This study |
| N2896# | No | 16 | 2896594.2896641 | 6 | 0.73 | This study |
| N2976# | No | 18 | 2976893.2976946 | 4 | 0.55 | This study |
| N3322 | No | 19 | 3322024.3322099 | 4 | 0.42 | This study |
| N3624 | Yes | 18 | 3624857.3624928 | 2 | 0.06 | This study |
| N3634 | Overlap | 16 | 3634057.3634120 | 3 | 0.15 | This study |
| N3743 | No | 8 | 3743960.3743999 | 12 | 0.85 | This study |
| N3763 | Yes | 18 | 3763926.3763997 | 4 | 0.33 | This study |
| N3773* | Yes | 9 | 3773759.3773803 | 10 | 0.85 | This study |
| N3779# | No | 17 | 3780032.3780099 | 4 | 0.55 | This study |
| N4268 | No | 7 | 4268345.4268414 | 25 | 0.95 | This study |
| N4287 | Overlap | 19 | 4287530.4287567 | 5 | 0.37 | This study |
| N4556 | Overlap | 19 | 4556736.4556792 | 4 | 0.17 | This study |
14+12 VNTRs used in rapid genotyping system were labeled with # and *, separately.
$
ML: motif length, DI: Nei’s diversity index.