Table 3.
Comp. No. | Carbohydrate-Peptide H-bond Occupancy |
Peptide-Peptide H-bond Occupancy |
|||
---|---|---|---|---|---|
GalNAc (HN) – 1T/1S (O) |
GalNAc (O) – 4A (HN) |
4A (O)- 7V/7A (HN) |
3P (O)- 6V/6A (HN) |
5A/5V (O)- 8V/8A (HN) |
|
1 | 0.672 | 0.092 | 0.035 | 0.103 | 0.050 |
2 | 0.292 | 0.059 | 0.020 | 0.106 | --- |
3 | 0.491 | 0.122 | 0.092 | 0.282 | 0.102 |
4 | 0.653 | 0.064 | --- | 0.177 | --- |
5 | 0.638 | 0.098 | --- | 0.026 | --- |
6 | 0.706 | 0.127 | 0.164 | 0.070 | 0.039 |
7 | 0.664 | 0.117 | 0.011 | 0.034 | 0.034 |
8 | 0.527 | 0.059 | 0.015 | 0.019 | 0.081 |
9* | 0.629 | 0.103 | 0.625 | 0.623 | 0.492 |
10 | 0.621 | 0.082 | --- | --- | 0.093 |
11* | 0.681 | 0.091 | 0.481 | 0.531 | 0.247 |
12 | --- | 0.015 | 0.014 | ||
13 | 0.043 | 0.096 | 0.023 | ||
14 | 0.520 | 0.465 | --- | --- | ---- |
Occupancies calculated using a H-bond cutoff distance of 3.5 Å.
Additional H-bonds between 3P(O)-7A(HN) (0.589 and 0.436) and 4A(O)-8A(HN) (0.543 and 0.209) found in 9 and 11.