Table 3.
SNP | Positiona | location | coding change | Allelesb | IRASFSc | AA-DHSd | Meta-analysis | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ||||||||||||||||||
MAFe | 1 / 1f | 1 / 2f | 2 / 2f | p-valueh | β | MAFe | 1 / 1f | 1 / 2f | 2 / 2f | p-valueh | β | p-valueh | β | |||||
rs1648707 | 188034405 | 5′ | A / Cg | 0.39 | 9.25 ± 4.73 | 9.19 ± 5.09 | 8.48 ± 5.10 | 0.017 | −0.072 | 0.44 | 8.75 ± 9.3 | 8.20 ± 5.8 | 7.62 ± 4.3 | 0.40 | 0.042 | 0.01657 | −0.02158 | |
rs822387 | 188038731 | 5′ | T / C | 0.33 | 9.43 ± 5.10 | 8.88 ± 4.96 | 7.68 ± 4.95 | 0.23 | −0.042 | 0.36 | 9.05 ± 8.0 | 7.40 ± 5.2 | 9.43 ± 7.8 | 0.98 | 0.0016 | 0.3445 | −0.0236 | |
rs17300539 | 188042154 | 5′ | G / A | 0.028 | 8.98 ± 5.25 | 11.16 ± 5.21 | - | 0.0018 | 0.32 | 0.013 | 8.35 ± 6.9 | 7.00 ± 3.3 | -- | 0.75 | −0.060 | 0.02231 | 0.156023 | |
rs822390 | 188045592 | intron 1 | T / G | 0.071 | 8.94 ± 5.42 | 10.32 ± 5.06 | 8.13 ± 2.94 | 0.24 | 0.10 | 0.036 | 8.24 ± 6.6 | 11.46 ± 10.2 | -- | 0.071 | 0.26 | 0.03487 | 0.179431 | |
rs16861209 | 188045808 | intron 1 | C / A | 0.14 | 8.90 ± 5.20 | 9.26 ± 4.51 | 9.16 ± 5.61 | 0.034 | 0.086 | 0.18 | 8.37 ± 7.2 | 8.39 ± 6.3 | 6.10 ± 2.4 | 0.70 | 0.025 | 0.05942 | 0.058759 | |
rs822391 | 188046497 | intron 1 | T / C | 0.031 | 8.97 ± 5.11 | 9.49 ± 4.34 | 8.13 ± 2.94 | 0.67 | −0.031 | 0.038 | 8.11 ± 6.6 | 10.76 ± 10.0 | 6.38 ± 0.6 | 0.24 | 0.13 | 0.6834 | 0.04213 | |
rs822394 | 188049422 | intron 1 | C / A | 0.029 | 8.93 ± 5.06 | 9.92 ± 4.62 | 5.87 ± 3.14 | 0.88 | −0.010 | 0.034 | 8.13 ± 6.6 | 11.08 ± 10.1 | -- | 0.11 | 0.22 | 0.3712 | 0.092191 | |
rs2241766 | 188053586 | exon 2 | G15G | T / G | 0.031 | 8.97 ± 5.04 | 9.29 ± 5.01 | - | 0.62 | 0.043 | 0.040 | 8.56 ± 7.1 | 6.83 ± 4.7 | -- | 0.18 | −0.18 | 0.6517 | −0.05417 |
G38D | 188053654 | exon 2 | G38D | G / A | 0.019 | 9.04 ± 5.28 | 9.81 ± 4.33 | - | 0.76 | −0.041 | 0.015 | 8.35 ± 6.9 | 7.99 ± 6.02 | -- | 0.64 | −0.10 | 0.604 | −0.06676 |
R55C | 188053704 | exon 2 | R55C | C / T | 0.010 | 9.06 ± 5.01 | 1.20 ± 0.37 | - | 0.00030 | −1.00 | 0.0046 | 8.37 ± 6.9 | 1.65 ± 0.7 | -- | 0.0010 | −1.40 | 1.016E-06 | −1.17612 |
rs2241767 | 188053890 | intron 2 | A / G | 0.028 | 9.06 ± 5.27 | 9.52 ± 5.26 | - | 0.31 | 0.087 | 0.044 | 8.51 ± 7.0 | 6.63 ± 4.8 | 2.51 | 0.035 | −0.26 | 0.6792 | −0.05886 | |
rs3774262 | 188054508 | intron 2 | G / A | 0.028 | 9.05 ± 5.26 | 9.52 ± 5.26 | - | 0.30 | 0.088 | 0.043 | 8.52 ± 7.0 | 6.49 ± 4.5 | -- | 0.081 | −0.22 | 0.8175 | −0.04341 | |
rs62625753 | 188054720 | exon 3 | G90S | G / A | 0 | 9.01 ± 5.03 | - | - | . | 0 | 0.009 | 8.38 ± 6.9 | 20.83 | -- | 0.065 | 1.12 | 0.06498 | 0.495953 |
rs17366743 | 188054783 | exon 3 | Y111H | T / C | 0.010 | 9.02 ± 5.04 | 7.28 ± 4.04 | - | 0.35 | −0.20 | 0.0056 | 8.40 ± 6.9 | 7.44 ± 4.3 | -- | 0.72 | −0.10 | 0.3382 | −0.15459 |
rs7639352 | 188061168 | 3′ | C / T | 0.33 | 8.62 ± 4.67 | 9.18 ± 5.76 | 10.20 ± 4.94 | 0.026 | 0.072 | 0.33 | 8.46 ± 7.6 | 7.93 ± 6.0 | 8.18 ± 5.6 | 0.77 | −0.015 | 0.1059 | 0.034991 | |
rs1865762 | 188062094 | 3′ | A / G | 0.010 | 8.95 ± 5.00 | 11.50 ± 5.69 | - | 0.17 | 0.19 | 0.013 | 8.40 ± 7.0 | 6.41 ± 2.0 | 9.98 | 0.93 | 0.017 | 0.2622 | 0.11473 | |
rs6444175 | 188062438 | 3′ | G / A | 0.33 | 8.74 ± 4.64 | 8.97 ± 5.33 | 10.21 ± 4.98 | 0.024 | 0.076 | 0.33 | 8.70 ± 7.8 | 7.96 ± 6.0 | 8.60 ± 5.8 | 0.79 | −0.015 | 0.09874 | 0.037586 | |
rs17373414 | 188068221 | 3′ | C / T | 0.020 | 8.96 ± 4.99 | 11.05 ± 6.10 | - | 0.47 | 0.10 | 0.025 | 8.28 ± 6.7 | 10.20 ± 9.4 | 2.51 | 0.46 | 0.11 | 0.3032 | 0.100109 |
Build NCBI36/hg18;
major/minor alleles;
IRASFS, Insulin Resistance Atherosclerosis Family Study;
AA-DHS, African American Diabetes Heart Study;
MAF, minor allele frequency;
1 corresponds to the major allele and 2 corresponds to the minor allele;
major and minor alleles are different for IRASF-FS and AA-DHS cohorts, IRASFS alleles are listed;
a strict Bonferroni correction (n=18 tests) would set a significance threshold p-value<0.0028