Table 2.

Regions of natural structural variation identified within the cultivar, Red Hawk.

Chr	Deletion start (bp)	Deletion stop (bp)	Deletion size (bp)	Mutants with deletion	Genes potentially affected	Deletion relative to gene
Chr01	18253164	18253570	406	Lanceolate, Chlorotic
Chr01	19119759	19130873	11,114	Lanceolate, Chlorotic
Chr01	21478079	2147855	376	Lanceolate, Chlorotic
Chr01	21604603	21604792	189	Lanceolate, Chlorotic
Chr01	22370255	22370296	41	Lanceolate, Chlorotic
Chr01	24740621	24744029	3,408	Lanceolate, Chlorotic
Chr01	25792230	25792287	57	Lanceolate, Chlorotic
Chr01	25873578	25880798	7,220	Lanceolate, Chlorotic
Chr01	30779938	30780112	174	Lanceolate, Chlorotic	Phvul.001G111700	P
Chr01	35937306	35938111	805	Lanceolate, Chlorotic
Chr02	23462357	23462602	245	Lanceolate, Maturity, Chlorotic
Chr02	23744872	23744518	646	Lanceolate, Maturity, Chlorotic
Chr02	24500720	24504943	4,223	Lanceolate, Maturity, Chlorotic
Chr02	24718765	24718893	128	Lanceolate, Maturity, Chlorotic
Chr02	24728318	24728663	345	Lanceolate, Maturity, Chlorotic
Chr02	25130420	25130510	90	Lanceolate, Maturity, Chlorotic	Phvul.002G125100	I
Chr02	25611051	25613798	2,747	Lanceolate, Maturity, Chlorotic
Chr02	26229269	26229410	141	Lanceolate, Maturity, Chlorotic
Chr04	3745720	3746721	1,001	Matruity, Chlorotic	Phvul.004G33700	I
Chr04	4160322	4160726	404	Matruity, Chlorotic
Chr04	4374139	4386350	12,111	Matruity, Chlorotic	Phvul.004G039400	P
					Phvul.004G039500	D
Chr04	4571494	4575913	4,419	Matruity, Chlorotic
Chr11	5406621	5407835	1,214	Lanceolate, Maturity, Chlorotic
Chr11	19639745	19639812	67	Rugose, Maturity

Genomic deletions identified by the program CREST that belong to SV Class 2. All SV were visually verified using IGV. This class of SV represents regions of heterogeneity within Red Hawk.

P, Deletion is within 1000 bp of start codon; I, Deletion is in an intron; D, Deletion is within 1000 bp of stop codon.