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. 2013 Jun 19;44(1):43. doi: 10.1186/1297-9716-44-43

Table 2.

Strain allocation table

Sample Closest 5′UTR reference strain % Identity to 5′UTR reference strain Closest Npro reference strain % Identity to Npro reference strain
1-1
 1e
 95
 1a
 83
1-2
 1e
 95
 1a
 83
1-3
 1e
 95
 -
 -
2-1
 1a
 98
 1a
 92
2-5
 1a
 98
 1a
 92
2-6
 1a
 98
 1a
 92
2-7
 1a
 98
 1a
 92
2-8
 1a
 96
 1a
 90
2-9
 1a
 98
 1a
 92
2-10
 1a
 96
 1a
 90
2-11
 1a
 97
 1a
 92
2-12
 1a
 96
 1a
 90
5-1
 1a
 95
 1a
 91
15-1*
 1a/1j
 95 to both
 1a
 90
18-1
 1b
 97
 1b
 95
18-2
 1b
 97
 1b
 95
18-3
 1b
 97
 1b
 95
18-4
 1b
 97
 1b
 95
18-5
 1b
 97
 1b
 95
18-6
 1b
 97
 1b
 95
19-1
 -
 -
 1a
 93
20-1*
 1a/1j
 96 to both
 1a
 92
20-2*
 1a/1j
 96 to both
 1a
 91
20-3*
 1a/1j
 96 to both
 1a
 91
26-1+
 1a
 96
 1a
 91
26-2+
 1a
 96
 1a
 91
26-3+
 1a
 96
 1a
 91
27-1*
 1a/1j
 95 to both
 1a
 92
33-1#
 1a
 94
 1a
 91
33-3#
 1a
 95
 1a
 92
34-1#
 1a
 95
 1a
 92
37-1*#
 1a/1j
 95 to both
 1a
 88
37-2*#
 1a/1j
 95 to both
 1a
 88
37-3*#
 1a/1j
 95 to both
 1a
 88
37-4*#
 1a/1j
 95 to both
 1a
 88
37-5*#
 1a/1j
 95 to both
 1a
 88
38-1
 1a
 97
 1a
 92
40-1
 1a
 99
 1a
 92
40-2
 1a
 96
 1a
 92
40-3
 1a
 99
 1a
 92
40-4
 1a
 96
 1a
 92
40-5
 1a
 96
 1a
 93
40-6
 1a
 99
 1a
 92
40-7
 1a
 96
 1a
 93
40-8
 1a
 96
 1a
 92
41-1
 1a
 95
 1a
 92
41-2
 1a
 95
 1a
 92
41-3
 1a
 95
 1a
 92
41-4
 1a
 95
 1a
 92
42-1^
 1j
 95
 1a
 81
42-2^
 1j
 95
 -
 -
43-1
 -
 -
 1a
 92
43-2+
 1a
 96
 1a
 92
43-3+
 1a
 96
 1a
 92
43-4+
 1a
 96
 1a
 92
43-5+
 1a
 96
 1a
 92
43-6+
 1a
 96
 1a
 92
43-7+
 1a
 96
 1a
 92
43-8+
 1a
 96
 1a
 92
44-1+#
 1a
 95
 1a
 93
44-2*#
 1a/1j
 94 to both
 1a
 93
45-1#
 1a
 95
 1a
 92
46-1
 1a
 96
 1a
 90
47-1
 1a
 97
 1a
 92
48-1
 1a
 96
 1a
 91
48-2
 1a
 96
 1a
 91
48-3
 1a
 96
 1a
 91
48-4
 1a
 96
 1a
 91
48-5
 1a
 96
 -
 -
48-6
 1a
 96
 1a
 91
48-7
 1a
 96
 1a
 91
48-8
 1a
 96
 1a
 91
48-9
 1a
 96
 1a
 91
48-10
 1a
 96
 1a
 91
49-3
 1a
 96
 1a
 93
50-1
 1a
 98
 1a
 92
50-2
 1a
 98
 1a
 91
56-1*#
 1a/1j
 94 to both
 1a
 92
56-2*#
 1a/1j
 94 to both
 1a
 92
56-3+#
 1a
 94
 1a
 92
56-4*#
 1a/1j
 94 to both
 1a
 92
56-5*#
 1a/1j
 94 to both
 1a
 92
57-1
 1a
 97
 1a
 92
57-2
 1a
 97
 1a
 92
58-1
 1i
 98
 1i
 98
58-2
 1i
 98
 1i
 98
59-1+
 1a
 96
 1a
 92
59-2
 1a
 98
 1a
 92
60-1*
 1a/1j
 94 to both
 1a
 90
61-1+
 1a
 96
 1a
 92
62-1
 -
 -
 1a
 92
62-2*#
 1a/1j
 94 to both
 -
 -
62-3*#
 1a/1j
 94 to both
 1a
 91
63-1*
 1c/1a/1j
 95 to all
 1a
 93
64-1+
 1a
 96
 1a
 84
65-1+
 1a
 95
 1a
 92
66-1
 1a
 97
 1a
 93
67-1
 1d
 97
 1d
 90
67-2
 1d
 97
 1d
 90
68-1
 1e
 98
 -
 -
69-1
 1i
 97
 -
 -
70-1
 1a
 95
 1a
 92
70-2
 1a
 95
 1a
 92
71-1 1b 98 1b 94

The table indicates the percentage identity of the closest reference strain to the field isolate investigated. Reference strains used are described in Table  3. Where discrepancies or high nucleotide identity occurs with multiple reference strains, this is noted as follows: * indicates isolates with equal 5′UTR nucleotide sequence identity to both BVDV 1a and 1j reference strains, + indicates isolates with 1% less 5′UTR nucleotide identity to BVDV 1j reference strains than to 1a reference strains, ^ indicates isolates with 1% higher 5′UTR identity to BVDV 1j reference strains than to either 1a or 1c reference strains, # indicates isolates with 1% less 5′UTR nucleotide identity to BVDV 1c reference strains than to 1a reference strains, – indicates that no sequence was obtained. (GenBank Accession numbers for the 5′UTR and Npro regions sequenced for this paper are KF023272-KF023470).