Table 2.
Contigs and singletons summary statistics for first round and final assembly by MIRA of A. naccarii transcriptome
| Round 1 | Final assembly | |
|---|---|---|
| Reads assembled (#) |
256,738 |
256,738 |
| Reads assembled (%) |
77.43 |
77.43 |
|
Total contigs (#) |
44,232 |
42,193 |
| Contigs (%) |
72.72 |
76.32 |
| Total contigs length (Mb) |
22.64 |
21.87 |
| Average contigs length (bp) |
511.89 |
518.29 |
| Average contigs GC content (%) |
38.49 |
38.83 |
| Average contigs quality (phred) |
43 |
43 |
| Average contigs coverage (bp/position) |
3.2 |
4.09 |
|
Total singletons (#) |
16,593 |
13,089 |
| Singletons (%) |
27.28 |
23.68 |
| Total singleton length (Mb) |
4.98 |
3.91 |
| Average singleton length (bp) |
300.19 |
298.55 |
| Average singleton GC content (%) |
38.39 |
38.46 |
| Average singleton quality (phred) | 28 | 28 |