Table 5.
BLASTX best hit (e-value < 1e-03) of A. naccarii
| Lamprey | Coelacanth | Danio | Stickleback | Medaka | Fugu | Tetraodon | Human | |
|---|---|---|---|---|---|---|---|---|
| reference proteins (#) |
11,429 |
21,817 |
41,693 |
27,576 |
24,661 |
47,841 |
23,118 |
97,041 |
| reference genes (#) |
10,402 |
19,033 |
26,160 |
20,787 |
19,686 |
18,523 |
19,602 |
21,860 |
|
A. naccarii ESTs with hit on reference proteins (#) |
7,052 |
11,264 |
11,530 |
11,010 |
10,816 |
10,766 |
10,359 |
11,102 |
|
A. naccarii ESTs with hit on reference proteins (%) |
12.76 |
20.38 |
20.86 |
19.92 |
19.57 |
19.47 |
18.74 |
20.08 |
| reference genes identified (#) |
3,326 |
5,565 |
5,865 |
5,526 |
5,403 |
5,346 |
5,283 |
5,478 |
| reference genes identified (%) | 31.97 | 29.24 | 22.42 | 26.58 | 27.45 | 28.86 | 26.95 | 25.06 |
Best hits from the alignment of A. naccarii transcriptome sequences against all translations from known-, novel- and pseudo-gene predictions in Ensembl realise 66 for the different species considered in this work.