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. 2013 Jun 15;14:193. doi: 10.1186/1471-2105-14-193

Figure 2.

Figure 2

Flowchart of FusionQ. FusionQ constructs the reference transcriptome directly from the RNA-Seq data, and detects the two types of fusion reads based on it. The proposed residual sequence extension method makes the short residual sequence longer, and therefore has a higher probability for unique mapping and increases the specificity of the detection results. The chimerical transcript quantification is based on the RSEM algorithm.