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. 2013 Jun 8;41(Web Server issue):W232–W237. doi: 10.1093/nar/gkt471

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© The Author(s) 2013. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — Visualization and analysis of the network using Cytoscape. The Cytoscape platform is deployed by CoPAP, allowing in-depth analysis of the coevolutionary network. (A) Global view of the bacterial coevolutionary network. Examples of clusters automatically detected using the transitivity clustering plug-in for Cytoscape: (B) B12 (Cobalamin) synthesis; (C) Type IV secretion/conjugation.