Skip to main content
. 2013 May 11;41(Web Server issue):W34–W40. doi: 10.1093/nar/gkt382

Figure 2.

Figure 2.

Example IgBLAST result of searching against the germline gene databases and the NCBI nr database simultaneously. A mouse IG sequence (GenBank accession AF104468) was searched against the default mouse germline gene databases [IMGT mouse V genes (F + ORF + in-frame P), IMGT mouse D genes (F + ORF + in-frame P) and IMGT mouse J genes (F + ORF + in-frame P)]. The ‘organism’ field was set to mouse, and the nr database was selected for the ‘additional database’ field. Default values are used for all other parameters, except the ‘number of alignments for additional database’ was 25. The light blue pop-up message box is a feature that displays the sequence title when the mouse pointer is moved over the sequence identifier (i.e. the accession AF021857 in the example). Only part of the result page is shown because of space limitation. A red box was added to indicate the hits from the nr databases that have 100% matches to the query over the 290 bases. The search was performed on 25 February 2013.