TABLE 3.
V3 sequences of the clade B HIV-1 strains testeda
| Strain | Amino acid sequence |
|---|---|
| Consensus | TRPNNNTRKSIHI..GPGRAFYTTGDIIGDIRQAH |
| BaL | -------------..----------E--------- |
| SF162 | -----------T-..-------A------------ |
| JR-CSF | ---S---------..----------E--------- |
| US1 | I------------..-----I-A--G------R-Y |
| JR-FL | -------------..----------E--------- |
| 92US717 | I-------R--N-..--------------N----- |
| P15 | -X----------M..---A---AR-EV-------- |
| P27 | -E-----I----L..-----WH---Q------K-F |
| 89.6 | --------RRLS-..-------ARRN--------- |
| IIIB | ---------R-R-QR------V-I--K--NM---- |
| ADA | -------------..----------E--------- |
| dBR-07 | --------RG-SM..------LAREQ---N----- |
| aBL-01 | -------KR--TR..----VY------V------- |
a
Dashes represent identity with the top sequence in the alignment (consensus of clade B); dots represent positions where insertions appear in IIIB.