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. 2004 Mar;78(5):2187–2200. doi: 10.1128/JVI.78.5.2187-2200.2004

TABLE 6.

Highly reactive regions to be included in vaccine designa

OLP Protein Sequence Lengthb
11-12 Gag-p17 TGSEELRSLYNTVATLYCVHQRIEVKDTKEALEK 34
22-25 Gag-p24 WVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKE 49
28-30 Gag-p24 LKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTS 41
35-37 Gag-p24 WMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKE 43
40-42 Gag-p24 GPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDC 43
59 Gag-p15 TRRQANFLGKIWPSHKGRPGNFLQSRP 27
281 Vpr ELKNEAVRHFPRIWLHSLGQHIYETYG 27
293-295 gp120 AAEQLWVTVYYGVPVWKEATTTLFCASDACAYDTEVHNVWA 41
75-79 Nef WLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIYSQKRQDILDLWV 58
81-85 Nef QKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPEKVEEAN 25
a

Peptides were included when recognized by at least 20% of the overall population, and adjacent peptides were added when targeted by >10% of the overall cohort.

b

Number of amino acids.