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. Author manuscript; available in PMC: 2014 Jun 18.
Published in final edited form as: Anal Chem. 2013 May 24;85(12):5666–5675. doi: 10.1021/ac4006556

Table 1.

Score components for data in Figure 2 and S-10 as computed by Eq. 1 through 4.

Scores
 Fragment Counts
Glycopeptide Protein Final Base Fam. Aver. Bias Fam. Size P PN b/y p B/Y gp glycan
IV495NQ 4 Hexose 5 HexNAc TRFL 67 43 29 5 12 1 1 0 6 0 5
GLIV495N 4 Hexose 5 HexNAc TRFL 74 50 29 5 12 1 1 1 6 0 8
GLIV495N 4 Hexose 4 HexNAc TRFL 60 35 30 5 14 0 1 1 7 0 5
SGEP152TS154TPT Hex HexNAc 2 NeuAc CASK 86 49 40 3 22 1 1 3 3 0 8
GEP152TS154TPT Hex HexNAc 2 NeuAc CASK 95 58 40 3 22 1 1 4 4 0 10
GEP152TS154TPT Hex HexNAc NeuAc CASK 69 43 29 3 10 1 1 3 2 0 5