Table 1. Summary of sequencing and assembly results.
sample | number/percent | 100–200nt | 200–300nt | 300–400nt | 400–500nt | > = 500nt | N50 | Mean | No. | Length (nt) |
Se200S-Contig | number | 104,526 | 27,965 | 14,858 | 8,904 | 23,039 | 372 | 271 | 179,292 | 48,616,772 |
percent | 58.30% | 15.60% | 8.29% | 4.97% | 12.85% | |||||
SeCKS-Contig | number | 99,706 | 27,420 | 14,531 | 8,841 | 21,676 | 363 | 267 | 172,174 | 45,962,606 |
percent | 57.91% | 15.93% | 8.44% | 5.13% | 12.59% | |||||
Se200S-Unigene | number | 18,352 | 28,118 | 16,203 | 10,311 | 28,767 | 547 | 438 | 101,751 | 44,551,677 |
percent | 18.04% | 27.63% | 15.92% | 10.13% | 28.27% | |||||
SeCKS-Unigene | number | 17,795 | 27,662 | 15,796 | 10,011 | 26,601 | 523 | 424 | 97,865 | 41,490,134 |
percent | 18.18% | 28.27% | 16.14% | 10.23% | 27.18% | |||||
All-Unigene | number | 0 | 34,417 | 18,808 | 11,186 | 45, 301 | 780 | 636 | 109,712 | 69,795,900 |
percent | 0 | 31.37% | 17.14% | 10.20% | 41.29% |
N50: 50% of the assembled bases were incorporated into sequence with N50 length or longer.
Mean: Mean length of assembled sequences.