Table 1.
List of annotated mitochondrial genes and regions of Ascaridia galli, Ascaridia columbae and Ascaridia sp
| Gene/region |
Position/length (bp) |
Start/stop codon |
Anticodons | ||||
|---|---|---|---|---|---|---|---|
| A. galli | A. columbae | Ascaridia sp. | A. galli | A.columbae | Ascaridia sp. | ||
|
cox1 |
1-1563 (1563) |
1-1563 (1563) |
1-1581 (1581) |
ATG/TAA |
ATG/TAA |
GTG/TAG |
|
| tRNA-Cys (C) |
1565-1620 (56) |
1565-1620 (56) |
1562-1616 (55) |
|
|
|
GAT |
| Non-coding region (NCL) |
1621-2230 (610) |
1623-2183 (563) |
1617-2182 (566) |
|
|
|
|
| tRNA-Asn (N) |
2231 -2284 (54) |
2184-2241 (58) |
2183-2239 (57) |
|
|
|
GTT |
| tRNA-Tyr (Y) |
2286-2344 (59) |
2246-2303 (58) |
2240-2295 (56) |
|
|
|
GTA |
|
nad1 |
2342-3217 (876) |
2301-3176 (876) |
2298-3167 (870) |
TTG/TAA |
TTG/TAA |
GTT/TAG |
|
|
atp6 |
3217-3813 (597) |
3176-3772 (597) |
3170-3766 (597) |
ATA/TAA |
ATA/TAA |
TTG/TAG |
|
| tRNA-Lys (K) |
3816-3876 (61) |
3790-3853 (64) |
3772-3833 (62) |
|
|
|
TTT |
| tRNA-Leu UUR (L2) |
3876-3931(56) |
3853-3907 (55) |
3831-3886 (56) |
|
|
|
TAA |
| tRNA-Ser AGN (S1) |
3932-3982 (51) |
3908-3962 (55) |
3887-3939 (53) |
|
|
|
GCT |
|
nad2 |
3986-4828 (843) |
3966-4808 (843) |
3943-4779 (837) |
TTG/TAA |
TTG/TAA |
TTG/TAG |
|
| tRNA-Ile (I) |
4832-4891 (60) |
4823-4884 (62) |
4781-4841 (61) |
|
|
|
GAT |
| tRNA-Arg (R) |
4896-4950 (55) |
4888-4944 (57) |
4845-4900 (56) |
|
|
|
ACG |
| tRNA-Gln (Q) |
4951-5005 (55) |
4945-4998 (54) |
4901-4954 (54) |
|
|
|
TTG |
| tRNA-Asp (D) |
5005-5063 (59) |
5011-5070 (60) |
4971-5025 (55) |
|
|
|
GTC |
| tRNA-Glu (E) |
5065-5125 (61) |
5069-5126 (58) |
5025-5083 (59) |
|
|
|
TTC |
|
rrnS |
5123-5823 (701) |
5124-5826 (703) |
5084-5774 (691) |
|
|
|
|
| tRNA-Ser UCN (S2) |
5826-5880 (55) |
5837-5891 (55) |
5781-5835 (55) |
|
|
|
TGA |
| tRNA-Phe (F) |
5883-5939 (57) |
5898-5953 (56) |
5841-5897 (57) |
|
|
|
GAA |
|
cytb |
5964-7067 (1104) |
5975-7075 (1101) |
5919-7019 (1101) |
ATG/TAA |
GTT/TAA |
GTT/TAG |
|
| tRNA-Leu CUN (L1) |
7067-7122 (56) |
7077-7134 (58) |
7020-7075 (56) |
|
|
|
TAG |
|
cox3 |
7144-7914 (771) |
7154-7918 (765) |
7097-7864 (768) |
TTG/TAG |
TTG/TAA |
TTG/TAA |
|
| tRNA-Thr (T) |
7889-7944 (56) |
7899-7956 (58) |
7845-7900 (56) |
|
|
|
TAG |
|
nad4 |
7939-9174 (1236) |
7951-9186 (1236) |
7901-9130 (1230) |
GTG/TAG |
ATA/TAG |
TTG/TAG |
|
| Non-coding region(NCR) |
9175-9331 (157) |
9187-9277 (91) |
9131-9231 (101) |
|
|
|
|
| tRNA-Met (M) |
9345-9407 (63) |
9288-9352 (65) |
9232-9294 (63) |
|
|
|
CAT |
| tRNA-Gly (G) |
9407-9462 (56) |
9355-9410 (56) |
9296-9351 (56) |
|
|
|
TCC |
|
cox2 |
9463-10158 (696) |
9411-10106 (696) |
9364-10050 (687) |
TTG/TAG |
TTG/TAG |
ATG/TAG |
|
| tRNA-His (H) |
10163-10218 (56) |
10113-10167 (55) |
10049-10105 (57) |
|
|
|
GTG |
|
rrnL |
10211-11166 (956) |
10167-11121 (955) |
10103-11055 (953) |
|
|
|
|
|
nad3 |
11167-11502 (336) |
11119-11454 (336) |
11053-11391 (339) |
TTG/TAA |
ATA/TAA |
TTG/TAA |
|
|
nad5 |
11502-13082 (1581) |
11451-13031 (1581) |
11394-12968 (1575) |
ATA/TAA |
ATA/TAG |
ATT/TAG |
|
| tRNA-Ala (A) |
13085-13139 (55) |
13031-13085 (55) |
12968-13022 (55) |
|
|
|
TGC |
| tRNA-Pro (P) |
13140-13197 (58) |
13094-13149 (56) |
13026-13082 (57) |
|
|
|
TGG |
| tRNA-Val (V) |
13197-13252 (56) |
13149-13205 (57) |
13082-13137 (56) |
|
|
|
TAC |
|
nad6 |
13253-13687 (435) |
13206-13640 (435) |
13138-13572 (435) |
TTT/TAA |
TTG/TAA |
TTG/TAG |
|
|
nad4L |
13702-13941 (240) |
13656-13895 (240) |
13588-13827 (240) |
ATT/TAA |
GTT/TAA |
ATT/TAA |
|
| tRNA-Trp (W) | 13919-13976 (58) | 13873-13930 (58) | 13805-13862 (58) | TCA | |||