Table 3.
Summary of the DNA divergence values for Trinidad and Mexico populations of (a) Colletotrichum gloeosporioides sensu lato and (b) C. truncatum
| |
ACT |
GPDH |
β-TUB |
ITS |
||||
|---|---|---|---|---|---|---|---|---|
| Trinidad | Mexico | Trinidad | Mexico | Trinidad | Mexico | Trinidad | Mexico | |
| (a) | ||||||||
| # polymorphic sites, S |
54 |
42 |
35 |
94 |
5 |
38 |
58 |
25 |
| Total # mutations, Eta |
60 |
44 |
38 |
12 |
5 |
40 |
58 |
26 |
| Theta (per site), S |
0.109 |
0.085 |
0.062 |
0.288 |
0.004 |
0.039 |
0.033 |
0.015 |
| Theta (per site), Eta |
0.109 |
0.085 |
0.063 |
0.278 |
0.004 |
0.040 |
0.032 |
0.016 |
| Theta (per site), Pi |
0.044 |
0.079 |
0.036 |
0.206 |
0.009 |
0.039 |
0.012 |
0.015 |
| Theta-W (per site) |
0.087 |
0.074 |
0.054 |
0.178 |
0.004 |
0.037 |
0.031 |
0.015 |
| Theta-W (per sequence) |
13.631 |
11.839 |
8.912 |
26.496 |
1.273 |
10.711 |
14.769 |
7.047 |
| Conservation threshold, CT |
0.52 |
0.580 |
0.45 |
0.38 |
0.99 |
0.91 |
0.92 |
0.92 |
| Ave. # nucleotide differences, k |
6.49 |
11.168 |
4.778 |
24.111 |
2.557 |
10.063 |
5.414 |
7.132 |
| Nucleotide diversity, Pi |
0.042 |
0.072 |
0.035 |
0.162 |
0.009 |
0.037 |
0.011 |
0.015 |
| Nucleotide diversity, Pi(JC) |
0.045 |
0.081 |
0.036 |
0.221 |
0.009 |
0.039 |
0.012 |
0.016 |
|
Pairwise comparisons |
|
|
|
|
|
|
|
|
| Ave # nucleotide differences, KT |
8.833 |
13.432 |
6.541 |
6.366 |
||||
| Total nucleotide diversity, PiT |
0.057 |
0.091 |
0.023 |
0.013 |
||||
| (b) | ||||||||
| # polymorphic sites, S |
4 |
6 |
0 |
1 |
0 |
10 |
0 |
3 |
| Total # mutations, Eta |
4 |
6 |
0 |
1 |
0 |
10 |
0 |
3 |
| Theta (per site), S |
0.008 |
0.009 |
0.000 |
0.002 |
0.000 |
0.016 |
0.000 |
0.002 |
| Theta (per site), Eta |
0.008 |
0.009 |
0.000 |
0.002 |
0.000 |
0.016 |
0.000 |
0.002 |
| Theta (per site), Pi |
0.012 |
0.006 |
0.000 |
0.002 |
0.000 |
0.009 |
0.000 |
0.001 |
| Theta-W (per site) |
0.008 |
0.009 |
0.000 |
0.002 |
0.000 |
0.016 |
0.000 |
0.002 |
| Theta-W (per sequence) |
1.543 |
2.121 |
0.000 |
0.353 |
0.000 |
3.535 |
0.000 |
1.060 |
| Conservation threshold, CT |
0.710 |
0.770 |
0.670 |
0.670 |
0.960 |
0.970 |
0.930 |
0.930 |
| Ave. # nucleotide differences, k |
2.286 |
0.2 |
0.000 |
0.356 |
0.000 |
1.800 |
0.000 |
0.756 |
| Nucleotide diversity, Pi |
0.012 |
0.001 |
0.000 |
0.002 |
0.000 |
0.013 |
0.000 |
0.002 |
| Nucleotide diversity, Pi(JC) |
0.012 |
0.001 |
0.000 |
0.002 |
0.000 |
0.014 |
0.000 |
0.002 |
|
Pairwise comparisons |
|
|
|
|
|
|
|
|
| Ave # nucleotide differences, KT |
5.758 |
0.209 |
36.765 |
1.268 |
||||
| Total nucleotide diversity, PiT | 0.029 | 0.001 | 0.272 | 0.003 | ||||