Table 2. EdgeR top ranking differentially expressed genes.
| EnsemblID | GeneSymbol | log2Ratio | adjustedP | EdgeRposition | affy Mapped ID | DSeqPosition |
| ENSG00000151503 | NCAPD3 | 5.58 | 0 | 1 | 212789 at | 1 |
| ENSG00000096060 | FKBP5 | 5.10 | 0 | 2 | 204560 at | 2 |
| ENSG00000166451 | CENPN | 5.09 | 0 | 3 | 219555 s at, 222118 at | 6 |
| ENSG00000113594 | LIFR | 4.24 | 0 | 4 | 205876 at | 5 |
| ENSG00000244324 | RP11-67L3.6 | 3.60 | 0 | 5 | not Found InAnnotation File | 8 |
| ENSG00000156689 | GLYATL2 | 3.40 | 0 | 6 | not Found InAnnotation File | 4 |
| ENSG00000116133 | DHCR24 | 3.38 | 0 | 7 | 200862 at | 3 |
| ENSG00000155368 | DBI | 3.01 | 0 | 8 |
 (202428 x at, 209389 x at, 211070 x at) |
22 |
| ENSG00000130066 | SAT1 | 2.93 | 0 | 9 | 213988 s at, 210592 s at,203455 s at | 10 |
| ENSG00000115648 | MLPH | 2.72 | 0 | 10 | 218211 s at | 7 |
The top 10 genes that were retrieved by EdgeR using the R-Cloud on EBI for the LNCaP dataset. Expression ratio is (stimulated/un-stimulated). Here we can see that the same set of identifiers used in the sscMap from the DESeq analysis would have been attained by EdgeR with the exception of ENSG00000155368 which was ranked 22nd in DESeq analysis. Table S2 contains the full list of differentially expressed genes returned by the EdgeR analysis.