Table 1. Overall gene expression changes for different experimental conditions.

Observation	Number of genes
Elevated in TBL20	1822
Reversed in BW720c (24h)	552
Reversed in BW720c (48h)	676
No change in BW720c	872
Repressed in TBL20	1257
Reversed in BW720c (24h)	399
Reversed in BW720c (48h)	487
No change in BW720c	678
No change in TBL20 vs BL20 (8048) but BW720c response*	383

Summary of the total numbers of bovine genes in the dataset where expression is altered by the presence of the Theileria parasite (TBL20 cells) compared to uninfected BL20 cells and the overall response following BW720c treatment of TBL20 cells to kill the parasite. Differentially expressed gene sets were derived by Rank Product analysis (FDR <5%). *This gene set included only genes for which there was no evidence for differential expression by RP analysis.